Transcript Information: S_Transcript_112275.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.34744550484275
Replicate 30.14521839435906
Condition 2: 8 Hour
Replicate 12.0149975102803
Replicate 23.3469694815339
Replicate 32.6854611155882
Condition 3: 24 Hour
Replicate 10.3440139132377
Replicate 20.53536562778773
Replicate 30.5957963245303


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_112275.p1 GENE.S_Transcript_112275~~S_Transcript_112275.p1 ORF type:complete len:127 (+),score=17.96,UBN2_3|PF14244.2|1.3e-11,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.4e-07 S_Transcript_112275:638-1018(+)
ATGATTGAGTCAATTCGAAAGTATGTGATATACTATTATTCTACTTATTCAATGTGGTTACATCTTGAGAAGAGGTTTTCTATAGACAATGGTTCCAGAAAATACAAACTAAACAAAGATGTGTATGATCTGAGGCAAAATGGAACTAACATAAGTGAATTTTACACTAGAATAAGATGCCTTTGGGAAGAGCTTGATTCAATGAATGAACTGCCAAAATTGAGTGTCATAGCACCTGAGATGGATGCATTTTTTAAAGCACTTGCCAAACAACAAGAAGAGCACAGATTATTTCAGTTCCTTAATGGACTAAAGAATGTGTATAACACACAATTTCAAAATCCTCTCCCTACTGTTGAGATGGCTTGTTTCGATCTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_112275.p1 GENE.S_Transcript_112275~~S_Transcript_112275.p1 ORF type:complete len:127 (+),score=17.96,UBN2_3|PF14244.2|1.3e-11,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.4e-07 S_Transcript_112275:638-1018(+)
MIESIRKYVIYYYSTYSMWLHLEKRFSIDNGSRKYKLNKDVYDLRQNGTNISEFYTRIRCLWEELDSMNELPKLSVIAPEMDAFFKALAKQQEEHRLFQFLNGLKNVYNTQFQNPLPTVEMACFDL*

Click here to download the sequence:
Link to NCBI Protein BLAST