Transcript Information: S_Transcript_112560.p1


Annotated TAIR IDAT5G40250.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16086056-16087186 | Forward length=376
E-Value1.4E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9219159715003
Replicate 24.1803180214239
Replicate 34.4165499568622
Condition 2: 8 Hour
Replicate 14.7701530972534
Replicate 24.6509895856274
Replicate 35.6655279160608
Condition 3: 24 Hour
Replicate 15.3462478016454
Replicate 25.009895190561
Replicate 35.8408944938164


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_112560.p1 GENE.S_Transcript_112560~~S_Transcript_112560.p1 ORF type:complete len:380 (+),score=87.54,zf-RING_2|PF13639.2|1.3e-13,zf-RING_11|PF17123.1|5.4e-10,zf-rbx1|PF12678.3|3.8e+03,zf-rbx1|PF12678.3|1.5e-08,zf-C3HC4|PF00097.21|3.8e-06,zf-ANAPC11|PF12861.3|1.6e-05 S_Transcript_112560:893-2032(+)
ATGTCATTAGTTCATTCTCAAATCAGGAAAATTGATGGTGGATTTTCATGGTCATCTTCAACAAGTCACCATAATTTCTTTCAAAGAGACACAAGCCCAGAAACACCACCATCACCACCAACTTCAACTTCATCTGGTGGTAAAATTAGTCCTGCAATATTGTTCATTATAATTATATTGGCAGTTATATTTTTCATATCTGGTCTTCTACACTTGCTTGTTAGATTCCTTATAAAGCAAAGATCTTCCTCATCTTTTTCTCAATCTAATAGATACCCAGATAATATCTCAAGTTCAGATGCTATTCAAAGGCAATTGCAACAGCTTTTCCATCTTCATGATTCAGGTTTAGACCAAGCCTTCATTGATGCACTTCCTGTGTTTCAGTACAAGGAAATTGTGGGTTTAAAAGAGCCATTTGATTGTGCTGTATGTTTGTGTGAGTTCTCAGAACAGGATAAGTTAAGGTTACTGCCTTTGTGTAGTCATGCTTTTCATATTGATTGTATTGACACTTGGTTGCTCTCAAATTCAACTTGCCCTCTTTGTAGGGGTGCCCTTTACACCCCAGGGCTTGTTGTTGAAAACCCGGTTTTCGATTTTGAGGATTTGAGGGATCATGAGGATGGTATTGGGATTGGTCAAAAGCCAGTTGAGATTCAGATTGGTTCTGAAAAGAGGGTGTTTCCTGTGATACTTGGTAAGTTTAGGAGCACTAGCAATGAATCACAAGAAACAAGTGGGGATCATAAGGAAAAAGATATTGGTGAAACTAGTAGTAGTAGTTTGGATGCAAGAAGGTGTTTCTCAATGGGTTCATATCAATATGTTGTTGCTGATTCAACTTTGCAAGTTGCTTTGTGTCCTAAAAGACCTTCCAATGGAGGTAATGGTGGTGGTGAATTGAAGATTTTGAGAGGAGGGATAGAAGGGCAAAATGGGAATTCTACTACTGCTACTAATATTGGGGATGCTGAGGCTAGAAAGATTAATGTTGGGACTAAAAATGAGAGCCTATCTGTTTCTAAGATATGGTTATGGTCTAAAAAGGGCAGATTTCCAAATTCTTCAAATACAGATTTTAGTGGTATTCCTGTTGATATGAGTTTGCCTTGGACTAATAGAACTCAAGCTACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_112560.p1 GENE.S_Transcript_112560~~S_Transcript_112560.p1 ORF type:complete len:380 (+),score=87.54,zf-RING_2|PF13639.2|1.3e-13,zf-RING_11|PF17123.1|5.4e-10,zf-rbx1|PF12678.3|3.8e+03,zf-rbx1|PF12678.3|1.5e-08,zf-C3HC4|PF00097.21|3.8e-06,zf-ANAPC11|PF12861.3|1.6e-05 S_Transcript_112560:893-2032(+)
MSLVHSQIRKIDGGFSWSSSTSHHNFFQRDTSPETPPSPPTSTSSGGKISPAILFIIIILAVIFFISGLLHLLVRFLIKQRSSSSFSQSNRYPDNISSSDAIQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEQDKLRLLPLCSHAFHIDCIDTWLLSNSTCPLCRGALYTPGLVVENPVFDFEDLRDHEDGIGIGQKPVEIQIGSEKRVFPVILGKFRSTSNESQETSGDHKEKDIGETSSSSLDARRCFSMGSYQYVVADSTLQVALCPKRPSNGGNGGGELKILRGGIEGQNGNSTTATNIGDAEARKINVGTKNESLSVSKIWLWSKKGRFPNSSNTDFSGIPVDMSLPWTNRTQAT*

Click here to download the sequence:
Link to NCBI Protein BLAST