Transcript Information: S_Transcript_113108.p1


Annotated TAIR IDAT3G29230.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:11188803-11190605 | Forward length=600
E-Value9.9E-187
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.155149630975
Replicate 22.4451029664256
Replicate 32.7569038475485
Condition 2: 8 Hour
Replicate 13.3527031168689
Replicate 25.535302756221
Replicate 35.3289619012453
Condition 3: 24 Hour
Replicate 12.4209535827205
Replicate 23.0958299318207
Replicate 33.5102845306089


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_113108.p1 GENE.S_Transcript_113108~~S_Transcript_113108.p1 ORF type:complete len:388 (+),score=72.29,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|4.1e-06,PPR_2|PF13041.2|1.5e-09,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|0.93,PPR_2|PF13041.2|2.4e+02,PPR_2|PF13041.2|3.4e+03,PPR|PF01535.16|7.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.5e-05,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.00034,PPR|PF01535.16|1e-06,PPR|PF01535.16|5.3,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|2.6e+02,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|7.4e+02,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.0098,PPR_3|PF13812.2|2.2e-05,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.00018,PPR_3|PF13812.2|28,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|3.5e+03 S_Transcript_113108:1186-2349(+)
ATGCCTGAGAGAGATGTTGTCAGCTGGAATACCATATTGGATGGATATGTTAAGGCAAATGACATGAACGCCGCATTCGATTTGTTTGAGAAGATGCCAGAGAGAAATGTGGTATCGTGGTCAACTATGGTTTCAGGTTATGCAAAGGTAGGAGATATAGAAATGGCTAGAATGTTGTTTGATAAGATGCCTGTAAAGAATTTGGTATCATGGACTATAATAATCTCTGCATATGCTGAGAAGGGAGTTGCAAAGGAGGCTACTGCCTTGTACAATGAGATGGAGAATACGGGACTGAAACCTGATGATGGGACAATTATCAGTATCCTAGCTGCTTGTGCAGAGTCTGGCTTGCTAGGACTAGGAAAGCGAGTTCATGGATCAATGCAAGCAACTAGATTTCGATGTAGTGTATCAGTGATTAATGCATTAATTGATATGTATACCAAATGTGGTAGCGTTGGAAAGGCATTGGAGATATTTGAAGGGATGGCAAAAAGAGATTTGGTTTCCTGGAATGCCATTATCCAAGGTTTAGCAATGCACGGACATGGAAAAACCGCCCTCAAGCTTTTCTCTAGAATGGAACAAGAAGGATTCAAACCTGATAAAGTCACTTTCATCGGGATCTTATGTGCATGTACTCACATGGGTTTCGTTGATAGGGGTCTGGATTACTTTTATGCAATGGAAAGGGATTATGGACTTGTCCCTCAAATCGAGCATTATGGTTGCTTGATCGACCTTTTGGGTCGTGGAGGGCGTTTAGAGGAAGCAATGGAGGTCGTTCAAAGCATGCCTATGGAACCAAATGCCATCATTTGGGGTACCCTGTTGGGAGCATGCCAGATACATAATGCTGTAGAACTTGCTAGGGAAGTTCTGAAGCATTTGATTAAACTAGAACCAACTGATGCTGGTAATTACTCAATGTTGTCCAATATTTATGCTGCTGCAGGTGATTGGACTAATGTTGCCAATATGAGACTCTCTATGAAGAGCACTGGAGTCCAAAAACCATCTGGCGCTAGTTCTATTGAGTTGGATGGTGAGGTTCATGAATTTACTGTATTTGATAACTCACACCCGAAATCAGACAGTATATATAATATGATCAGCATACTACACCCACAGCGTAAGAAAGCTGGTTATGTTCCCTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_113108.p1 GENE.S_Transcript_113108~~S_Transcript_113108.p1 ORF type:complete len:388 (+),score=72.29,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|4.1e-06,PPR_2|PF13041.2|1.5e-09,PPR_2|PF13041.2|0.0019,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|0.93,PPR_2|PF13041.2|2.4e+02,PPR_2|PF13041.2|3.4e+03,PPR|PF01535.16|7.4e-08,PPR|PF01535.16|1.1e-07,PPR|PF01535.16|8.5e-05,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|0.00034,PPR|PF01535.16|1e-06,PPR|PF01535.16|5.3,PPR|PF01535.16|0.0012,PPR|PF01535.16|1.7e+02,PPR|PF01535.16|2.6e+02,PPR_1|PF12854.3|1e-07,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.0023,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.00027,PPR_1|PF12854.3|7.4e+02,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.0098,PPR_3|PF13812.2|2.2e-05,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.00018,PPR_3|PF13812.2|28,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|3.5e+03 S_Transcript_113108:1186-2349(+)
MPERDVVSWNTILDGYVKANDMNAAFDLFEKMPERNVVSWSTMVSGYAKVGDIEMARMLFDKMPVKNLVSWTIIISAYAEKGVAKEATALYNEMENTGLKPDDGTIISILAACAESGLLGLGKRVHGSMQATRFRCSVSVINALIDMYTKCGSVGKALEIFEGMAKRDLVSWNAIIQGLAMHGHGKTALKLFSRMEQEGFKPDKVTFIGILCACTHMGFVDRGLDYFYAMERDYGLVPQIEHYGCLIDLLGRGGRLEEAMEVVQSMPMEPNAIIWGTLLGACQIHNAVELAREVLKHLIKLEPTDAGNYSMLSNIYAAAGDWTNVANMRLSMKSTGVQKPSGASSIELDGEVHEFTVFDNSHPKSDSIYNMISILHPQRKKAGYVPF*

Click here to download the sequence:
Link to NCBI Protein BLAST