Transcript Information: S_Transcript_11313.p1


Annotated TAIR IDAT2G27170.1
Annotated Gene NameStructural maintenance of chromosomes (SMC) family protein
Annotated Gene Symbol(s)TTN7, SMC3
Annotation TypeOrtholog
Chromosome Positionchr2:11609319-11617064 | Reverse length=1204
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.491698737148
Replicate 221.000846159726
Replicate 319.758981148488
Condition 2: 8 Hour
Replicate 127.501789670394
Replicate 226.549164775775
Replicate 325.101400623625
Condition 3: 24 Hour
Replicate 124.600420661192
Replicate 220.576107771389
Replicate 320.261360152823


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11313.p1 GENE.S_Transcript_11313~~S_Transcript_11313.p1 ORF type:complete len:1205 (+),score=313.27,SMC_N|PF02463.15|1.6e-60,SMC_hinge|PF06470.9|6.1e-29,AAA_21|PF13304.2|0.00023,AAA_21|PF13304.2|6.3e+03,AAA_21|PF13304.2|3.5e-08 S_Transcript_11313:206-3820(+)
ATGCATATAAAGCAGGTCATTATCGAAGGGTTTAAGAGCTACAAAGAGCAAGTCGCTACTGAAGATTTCAGTCCCAAAGTCAACTGTGTTGTTGGTGCTAATGGATCGGGGAAGTCAAACTTTTTTCATGCTATTCGTTTTGTGCTCAGCGATCTTTTTCAAAACCTTCGCAGTGAAGACAGACATGCTTTACTTCATGAAGGAACAGGAAATCAAGTTTTGACTGCGTTTGTGGAGATTGTGTTTGACAACTTTGACAATAGAATTCCGGTTGACAAAGAGGAAGTTCGTTTGCGACGAACAATTGGGCTAAAAAAAGATGAATATTTTTTGGATGGGAAGCATATCACGAAAACTGAAGTTATGAATCTTTTGGAAAGTGCTGGTTTCTCTCGATCAAACCCTTACTACGTTGTACAGCAAGGAAAGATAGCATCACTGACACTTATGAAAGACTCTGAACGACTAGATTTGCTGAAAGAAATTGGTGGAACCAGGGTTTATGAGGAGAGGCGGCGTGAGAGTTTGAAAATCATGCAAGAAACAGGAAACAAAAGAAAACAGATAATTGAAGTGGTTAAATACCTGGATGAGCGGTTGAAGGAGCTGGATGAAGAGAAGGAGGATCTCAGAAAATATCAACAGCTTGACAAGCAGAGAAAATCCCTGGAATACACCTTATATGATAAGGAACTTCAGGATGCTCGGCAGAGGTTGGCCAAGGTGGAAGAAGATCGTGACAAGGTTTCTGAGAAATCAACTAAAATGTATCATGCCGTGCTTCAGTCTGAGGAAAAGTGTAAGGAACTGGACGAGGATTTTAAAAGGCTTACCAAAGAGCAGCAAGTGTTAAGCAAAGAGAAAATGGTGATCGAGAAACATCGAGCTGAAGCAATTCAAAGGAAGACAGAACTTGAGCTTGACTGCAGAGACCTAAAAGAGAGGATCTCTAGAAGTTCTAGTGCACAGAATGAGGCAGCCAAACAGCTTGAGCATGTGAAGAAGGATATTTTTGACTCGAAAAATGATCTAGACAATATTCAGCCTTTGTATGACGAGTTAAAGAAGAAGGAGGATGAAATGACAAAAGGAATAATGGAGCGTGAAAAGAAGCTTAGCATTCTTTATCAAAAACAAGGTCGCGCCACTCAGTTTTCGAGTAAAGCAGCTCGTGACAAATGGCTTAAAAATGAGATTGACGAACTTGATCAAGTTCTTCAGACAAATGAGTCGCAGGGAAAAAAACTCCGGGGTGAAATCAAGCACCTTGAGTCCCAGTTGGAGGATCAAGATGATTTTGTTAACAACCGGAAAGCTTATTATGCAGAAGTAGAGAACAGCATTAAACAGGCTGAAAGAGAGACTCTTCCATCCAAGGGACAGAGGGACAGGCTGCAGGATGAGCGGAAGTCTTTATGGGAACAAGAAAATGAACTTTCCTCTGAAATTGAGAAGTTGAAGTCAGAAGTTGTGAAGGCCGAAAAGAACCTTGACCATGCAACTCCTGGTGATATTAGGAGAGGGCTAAATTCTGTTAGGAAAATTATCAGGGAATATGGGATTGGTGGTGTATTCGGGCCAATTATTGAATTATTGAACTGTGATGAGAGGTTTTTCACTGCAGTTGAAGTTACTGCTGGGAACAGCTTGTTCCACGTTGTGGTTGATACAGATGAAACAGCTACTCAGATAATTAGACAACTAAATGCAACTAAGGGAGGGCGTGTGACATTTATACCTCTGAACAAGGTTAAGCCCCCACAAGTTACATGCCCACAGAGCGATGATGTGGTTCCTTTGTTGAAAAAATTGAGGTTTCATCAAGACTACACAAAAGCTTTCTCTCAGGTATTTGGTAGAACTGTAGTATGTCGAAACCTGGATGTAGCTACAAGAGTTGCTCGTACTGATGGTTTAGATTGCATAACTCTGGAAGGTGACCAAGTCAGCAAGAAAGGTGGGATGACTGGAGGATTTTATGATAGTAGGCGGTCGAAACTGAAGTTCATGAACATTATTAAAACGAATACAATTGTTATAGACCGAAAGGAGATTGAGTTGAAAGAAGTGAGGGAAAAACTTCAAGAAATAGATAAAGAAATCACTGAAAAAATCACGGAGCAACAGAAAATTGAAGCTGACTGTGCTCATCAAAGATCAGTACTGGAGCAGCTTAAGCAGGATATTGCTGACGCTAACAAGCAAAAAAAAGCCACGTTGACTGCCCTGGAAAAAAAGAGAAAGTTACTCGACAGTTTGCACGCACAGACTGAACAGCTGAATGCTAATATAGCTCTGAAAAAAGCTGAAATGGGTACAGAACTTGTTGATCATTTGACCCCAGAGGAAAGAGACCTTCTGTCTCGATTGAACCCGGAAATCAAGGGGATGAAAGAGAAACTCATGGAATATCGGACAGAGCTTGTGGAGATCGAGACAAAGAAATTAGAGCTTGAAACCAATCTTTCCACAAATCTGTTGCGGCGTCAGCAGGAGTTGGAGGCCATGTTATCATCTGCAGAATCCGAAAATTTGTTGGCTGAAGTCGAATCCAAAGAGAATGAGCTAAAGGAAGCTAATTCTTTGGTGGCAGATGCAACTGAGAAGCTCAAAAGATTTTCTGGGTCAATGGATCAAATCTCCAAGGAACTGAAGAAGATTAAAATTGAAAATGATAAATTACAGAAATCAAGAGAAGACTATGAGAAGCAACTGCAGAATGAAGCAGAAGAACTGGAGAAACTAATAAGTAATAAGAATATGCTTCTTGCTAGACAGGAGGAATACTCAAAAAAAATCAGAGACTTGGGTCCATTGTCTTCAGAAGCTTTTGATACTTACAGACGGAAAAGTACCAAAGAATTGCATAAAATGCTGCATAAATGTAATGAGCAACTCCAACAGTTTAGTCATGTCAACAAGAAGGCTCTTGATCAATATGTAAATTTCACTGAGCAACGAGAGGAACTCCAGAAAAGACAAGCTGAACTCGACGCGGCTGATGAGAAAATTCGCGAATTAATCTCAGTTCTGGATCAAAGAAAGGATGAGTCTATTGAGCGTACTTTCAAGGGTGTTGCTAGGAATTTCCGCGAGGTATTCTCTGAACTTGTGCAAGGTGGGCATGGATTCTTGGTGATGATGAAGAAAAAGGATGGTGACAATGGCGATGATGACCAGGATGAAGATGGTCCTCGTGAAGCAGACAATGAGGGAAGGATCGAGAAATATATTGGAGTCAAAGTCAAGGTGTCATTTACTGGGCAAGGGGAAACGCAGTCGATGAAGCAGCTATCTGGGGGTCAGAAAACTGTTGTAGCATTGGCATTGATCTTTGCCATACAGCGATGTGATCCAGCTCCATTTTATCTGTTTGATGAGATAGATGCAGCTTTGGATCCTCAATACAGAACTGCTGTCGGAAATATGATTCGTAGGTTGGCTGACCAAGCAAATACCCAATTTATAACCACAACATTTCGACCGGAGCTCGTGAAAATTGCTGACAAGATATACGGGGTGACACATAATAAGCGTGTGAGCCGTGTCAATGTTGTCACTAAAGATGAAGCGCTGCTCTTTATTGAACGAGATCAATCTCACAATGCTGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11313.p1 GENE.S_Transcript_11313~~S_Transcript_11313.p1 ORF type:complete len:1205 (+),score=313.27,SMC_N|PF02463.15|1.6e-60,SMC_hinge|PF06470.9|6.1e-29,AAA_21|PF13304.2|0.00023,AAA_21|PF13304.2|6.3e+03,AAA_21|PF13304.2|3.5e-08 S_Transcript_11313:206-3820(+)
MHIKQVIIEGFKSYKEQVATEDFSPKVNCVVGANGSGKSNFFHAIRFVLSDLFQNLRSEDRHALLHEGTGNQVLTAFVEIVFDNFDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIEVVKYLDERLKELDEEKEDLRKYQQLDKQRKSLEYTLYDKELQDARQRLAKVEEDRDKVSEKSTKMYHAVLQSEEKCKELDEDFKRLTKEQQVLSKEKMVIEKHRAEAIQRKTELELDCRDLKERISRSSSAQNEAAKQLEHVKKDIFDSKNDLDNIQPLYDELKKKEDEMTKGIMEREKKLSILYQKQGRATQFSSKAARDKWLKNEIDELDQVLQTNESQGKKLRGEIKHLESQLEDQDDFVNNRKAYYAEVENSIKQAERETLPSKGQRDRLQDERKSLWEQENELSSEIEKLKSEVVKAEKNLDHATPGDIRRGLNSVRKIIREYGIGGVFGPIIELLNCDERFFTAVEVTAGNSLFHVVVDTDETATQIIRQLNATKGGRVTFIPLNKVKPPQVTCPQSDDVVPLLKKLRFHQDYTKAFSQVFGRTVVCRNLDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDSRRSKLKFMNIIKTNTIVIDRKEIELKEVREKLQEIDKEITEKITEQQKIEADCAHQRSVLEQLKQDIADANKQKKATLTALEKKRKLLDSLHAQTEQLNANIALKKAEMGTELVDHLTPEERDLLSRLNPEIKGMKEKLMEYRTELVEIETKKLELETNLSTNLLRRQQELEAMLSSAESENLLAEVESKENELKEANSLVADATEKLKRFSGSMDQISKELKKIKIENDKLQKSREDYEKQLQNEAEELEKLISNKNMLLARQEEYSKKIRDLGPLSSEAFDTYRRKSTKELHKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDAADEKIRELISVLDQRKDESIERTFKGVARNFREVFSELVQGGHGFLVMMKKKDGDNGDDDQDEDGPREADNEGRIEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADQANTQFITTTFRPELVKIADKIYGVTHNKRVSRVNVVTKDEALLFIERDQSHNAE*

Click here to download the sequence:
Link to NCBI Protein BLAST