Transcript Information: S_Transcript_113164.p1


Annotated TAIR IDAT5G40400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16166444-16168276 | Forward length=610
E-Value3.1E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.9735064691969
Replicate 27.8893256776872
Replicate 37.1372817660993
Condition 2: 8 Hour
Replicate 110.365592197492
Replicate 210.043089946627
Replicate 39.6350270907965
Condition 3: 24 Hour
Replicate 19.2654768984873
Replicate 29.9636571016759
Replicate 37.3792049420541


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_113164.p1 GENE.S_Transcript_113164~~S_Transcript_113164.p1 ORF type:complete len:646 (+),score=96.30,PPR_2|PF13041.2|2.2e+03,PPR_2|PF13041.2|14,PPR_2|PF13041.2|0.2,PPR_2|PF13041.2|4.1e-10,PPR_2|PF13041.2|1.9e-08,PPR_2|PF13041.2|1.3e-17,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|2.7e-14,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|0.0066,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|6.2e-06,PPR_2|PF13041.2|4.3e+02,PPR_2|PF13041.2|5.3,PPR_1|PF12854.3|8.1e+02,PPR_1|PF12854.3|4,PPR_1|PF12854.3|5.6e-07,PPR_1|PF12854.3|6.4e-08,PPR_1|PF12854.3|1.8e-12,PPR_1|PF12854.3|3.8e-10,PPR_1|PF12854.3|0.064,PPR_1|PF12854.3|73,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|0.00062,PPR_1|PF12854.3|0.26,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.1,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.00031,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|0.036,PPR|PF01535.16|0.35,PPR|PF01535.16|96,PPR|PF01535.16|6.1e-05,PPR|PF01535.16|39,PPR|PF01535.16|3.4e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|0.92,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|6.9e+03 S_Transcript_113164:105-2042(+)
ATGCTCATGAATCGAATTTCTTCATTTTCTGCAACTCATTCTATTCACCCAAAATCTCAATCAAAATCCATACTTTTTAATCTGTTTTGTTCTTCATATTCATCTTCAACATCCCTCACTATCACTGATAATTACCCTACAATAACAACCATCTTAAACCCACTTTACAATTTTCTTCCACAAACCCAAAACCCCAACAATTTAGTCAATCTAATCTCCTCATCTCTCAAAAAACCCAACTCAAAATCACATCTTTTTCACTTGGGTCAACAATTGAATGACCTTATTCCTCACTTAAACACTCAACATATATCAAGGGTTTTGCTTAGATGCCAATGTGAGCCTCACTCAGCTCTCACTTTCTTCAACTGGGTTAAAAATGATCTGGGTATTATTCCAACTCCTCATAACTACTCTATTATTGTTCATATTTTGGTTTGTTCCCATAATTTTGTGGAGGGTATGTCCTTATTGAATGAACTAATTCAATCAGAGAACAATAGTAGCAAAAAAGATGTTAACTTTGATGTTTTTGAGTGTTTGGTTTCATGTACTGAGGATTGTAACTGGGACCCAGTTGTGTTTGATATGCTTATCAAGGCTTATGTGAAGGTTGATCATATTGAAAAAGGGTATATGACTATTAAGAAGATGGTTAAGCTTGGATTTGTGCCTCATGTTTTGGCTTTTAATTGTTTGTTGAATGTTTTGTCCAAGTTCAATTGTATTGATAAAAGTTGGGAACTTTACAAGGAGATGTGGCGAATTGGCGTTGTCCCGAATACTTGTACCTTTAACATACTTACCAATGTGTTGTGCAAAGATCGTAATGTTGATAAGGTGAACGAGTTTATTGAGAAGATGGAGGAGGAAGGGTTTGAGCCTGATATTGTGACTTATAATACTCTAATTGGACGTTATTGTAGGAATTGTAGGTTGTATGACGCATTTTATTTGTATAAGATTATGTATAGGAGGGGTGTGATGCCGGATTTGTATACATACACCTCGTTGATGAATGGTCTTTGTAAGGTTGGAAGGGTAAAAGAGGCTCGTCAAGTCTTTTGTCGAATGATTCATAGAGGAATGGTTCCAGATGTTGTTGCTTATAACTCCCTTATCCTTGGTTACTGCAAAGAAGGAAGGATGAAAGAAGTTAGGCTCTTAGTTCATGAGATGATTGGAAATGGGATAAAACCTGATGATTTTACTTGTCAGGTTCTCGTGGAAGGATATGGGAGATCTGGTCGTTGGCATTCATGCTTGAATATGATTGTTGAACTTAAGAGATTTGGGTTTCCGATTTCCAGTGATACATATAAGTATTTGATTGTTTCTTTGGCTCAGGGGAACCATCCATTTGTAGCTGTTAAGCTCTTAGATAGAATGCTAGAAGAAGGTCACGAGCCTGATGAGGAAATATATGGCAAATTGATTAAATCACTATGTGGTGATGATCACCTAGAAGAGGCATTCCGACATAAAAGCGACAAGATTGAAAAGGGTCTTAAGCCCTCGTTAGACATCTATCACAATCTGATTAGCTGCTTGTGCAGATTGAACAGAAGCTCAGAAGCAGAAGACCTGATGCAGGAAATGATCTTACGTGGCCTTAAACCTGACAGCAATATTTGTAGGGAGTTGGTGTTTGAGTACTGTAAAGCACAAAATATTGATAAAGCAGAGTCCTTGCTCATTTCACTGGCTACTGAATATCAGCTGCATGATTTAGATAGTTGTAATTTACTTTTCAAGGCTAGAAGCGAGCATGGTGGTGCTATTGAATTGATGGAGCTACAAGATAAGATGATGAAGTTGGGTTTTGCACCCAATGGTTTGACTTGCAAGTATGTGCTTCATGGTTTGCAGAATGCTATTACAAAGGACAAGGACAATTTTCAAGTCAATAAGAGTAACACCAGTGAAGCCTTCCCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_113164.p1 GENE.S_Transcript_113164~~S_Transcript_113164.p1 ORF type:complete len:646 (+),score=96.30,PPR_2|PF13041.2|2.2e+03,PPR_2|PF13041.2|14,PPR_2|PF13041.2|0.2,PPR_2|PF13041.2|4.1e-10,PPR_2|PF13041.2|1.9e-08,PPR_2|PF13041.2|1.3e-17,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|2.7e-14,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|0.0066,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|6.2e-06,PPR_2|PF13041.2|4.3e+02,PPR_2|PF13041.2|5.3,PPR_1|PF12854.3|8.1e+02,PPR_1|PF12854.3|4,PPR_1|PF12854.3|5.6e-07,PPR_1|PF12854.3|6.4e-08,PPR_1|PF12854.3|1.8e-12,PPR_1|PF12854.3|3.8e-10,PPR_1|PF12854.3|0.064,PPR_1|PF12854.3|73,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|0.00062,PPR_1|PF12854.3|0.26,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.1,PPR|PF01535.16|0.0013,PPR|PF01535.16|0.00031,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|0.036,PPR|PF01535.16|0.35,PPR|PF01535.16|96,PPR|PF01535.16|6.1e-05,PPR|PF01535.16|39,PPR|PF01535.16|3.4e+03,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|8.8,PPR_3|PF13812.2|0.92,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|1.7e-05,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|3.6e+02,PPR_3|PF13812.2|0.33,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|6.9e+03 S_Transcript_113164:105-2042(+)
MLMNRISSFSATHSIHPKSQSKSILFNLFCSSYSSSTSLTITDNYPTITTILNPLYNFLPQTQNPNNLVNLISSSLKKPNSKSHLFHLGQQLNDLIPHLNTQHISRVLLRCQCEPHSALTFFNWVKNDLGIIPTPHNYSIIVHILVCSHNFVEGMSLLNELIQSENNSSKKDVNFDVFECLVSCTEDCNWDPVVFDMLIKAYVKVDHIEKGYMTIKKMVKLGFVPHVLAFNCLLNVLSKFNCIDKSWELYKEMWRIGVVPNTCTFNILTNVLCKDRNVDKVNEFIEKMEEEGFEPDIVTYNTLIGRYCRNCRLYDAFYLYKIMYRRGVMPDLYTYTSLMNGLCKVGRVKEARQVFCRMIHRGMVPDVVAYNSLILGYCKEGRMKEVRLLVHEMIGNGIKPDDFTCQVLVEGYGRSGRWHSCLNMIVELKRFGFPISSDTYKYLIVSLAQGNHPFVAVKLLDRMLEEGHEPDEEIYGKLIKSLCGDDHLEEAFRHKSDKIEKGLKPSLDIYHNLISCLCRLNRSSEAEDLMQEMILRGLKPDSNICRELVFEYCKAQNIDKAESLLISLATEYQLHDLDSCNLLFKARSEHGGAIELMELQDKMMKLGFAPNGLTCKYVLHGLQNAITKDKDNFQVNKSNTSEAFP*

Click here to download the sequence:
Link to NCBI Protein BLAST