Transcript Information: S_Transcript_11329.p1


Annotated TAIR IDAT3G53230.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19723416-19726489 | Forward length=815
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 196.448536391328
Replicate 2111.56573726602
Replicate 3106.79782987418
Condition 2: 8 Hour
Replicate 1144.56396391106
Replicate 2136.24085601876
Replicate 3134.54683949243
Condition 3: 24 Hour
Replicate 1111.18684197458
Replicate 2109.75607095543
Replicate 3104.07819978518


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11329.p1 GENE.S_Transcript_11329~~S_Transcript_11329.p1 ORF type:complete len:846 (+),score=240.62,AAA|PF00004.25|2.6e-48,AAA|PF00004.25|4.7e-47,CDC48_N|PF02359.14|5.6e-22,RuvB_N|PF05496.8|1e-05,RuvB_N|PF05496.8|1.4e-05,AAA_2|PF07724.10|3.2e-06,AAA_2|PF07724.10|0.0023,AAA_2|PF07724.10|6.9e+03,CDC48_2|PF02933.13|2.5e-12,AAA_16|PF13191.2|0.001,AAA_16|PF13191.2|0.00011,AAA_16|PF13191.2|4.3e+03,AAA_17|PF13207.2|3.7e-05,AAA_17|PF13207.2|0.012,AAA_17|PF13207.2|1.7e+03,AAA_22|PF13401.2|1.8e+03,AAA_22|PF13401.2|0.0056,AAA_22|PF13401.2|0.067,AAA_22|PF13401.2|8e+02,AAA_5|PF07728.10|6.2e-05,AAA_5|PF07728.10|0.023,AAA_33|PF13671.2|0.00019,AAA_33|PF13671.2|0.0083,AAA_14|PF13173.2|6.9e+03,AAA_14|PF13173.2|0.004,AAA_14|PF13173.2|0.029,TIP49|PF06068.9|0.00092,TIP49|PF06068.9|0.045,AAA_18|PF13238.2|0.0047,AAA_18|PF13238.2|0.064,AAA_25|PF13481.2|5.1,AAA_25|PF13481.2|0.17,AAA_25|PF13481.2|0.21,AAA_25|PF13481.2|7.2e+02,Arch_ATPase|PF01637.14|2.1,Arch_ATPase|PF01637.14|1.8,Arch_ATPase|PF01637.14|0.31,RNA_helicase|PF00910.18|0.73,RNA_helicase|PF00910.18|0.006,Mg_chelatase|PF01078.17|0.05,Mg_chelatase|PF01078.17|0.029,IstB_IS21|PF01695.13|0.2,IstB_IS21|PF01695.13|0.037,AAA_19|PF13245.2|0.056,AAA_19|PF13245.2|0.11,NACHT|PF05729.8|4.4,NACHT|PF05729.8|2.1e+03,NACHT|PF05729.8|0.3,NACHT|PF05729.8|64,ABC_tran|PF00005.23|5.9,ABC_tran|PF00005.23|0.017,KaiC|PF06745.9|7,KaiC|PF06745.9|7,KaiC|PF06745.9|2.2,KaiC|PF06745.9|1.1e+02,Viral_helicase1|PF01443.14|2.3e+03,Viral_helicase1|PF01443.14|37,Viral_helicase1|PF01443.14|0.0018 S_Transcript_11329:118-2538(+)
ATGGCTGACAAACCTGAATCTTCAGATTCGAAGGGAGCGAAGAAGGATTTCAGTACGGCGATTCTTGAGAGAAAGAAGGCTCCGAATCGGTTGGTTGTAGATGAAGCTGTCAATGACGACAATTCAGTGGTTTCTATGCACCCTGATACGATGGAAAAGCTTCAGCTTTTTCGGGGTGATACGGTTCTAGTTAAGGGAAAGAAAAGGAGAGATACAATCTGTATTGCTCTTGCTGACGAGACATGTGAAGAACCCAAAATTAGGATGAACAAGGTTGTAAGGTCAAACCTAAGGGTGAGACTTGGAGATGTGGTTTCTGTACATCAATGTCCTGATGTAAAGTACGGGAAACGGGTGCATATTCTTCCTATTGATGACACTGTTGAGGGAGTCACTGGAAATCTCTTTGATGCTTACTTGAAACCTTACTTCTTGGAAGCATATCGTCCTGTGCGAAAAGGTGACTTGTTTCTTGTTAGAGGGGGTATGAGGAGTGTAGAGTTTAAGGTCATTGAGACTGACCCTCCTGAGTACTGTGTTGTGGCTCCTGATACAGAGATCTACTGTGAGGGGGAGCCTGTAAAACGAGAAGATGAAAATAGATTGGATGAGGTTGGCTATGATGATGTTGGTGGAGTACGTAAGCAGATGGCACAGATTAGGGAGCTAGTGGAGCTGCCACTTAGACATCCTCAACTGTTCAAATCAATTGGTGTGAAGCCACCAAAAGGAATTCTTCTTTATGGACCTCCAGGGTCTGGGAAAACTTTAATAGCTCGAGCTGTTGCCAATGAAACTGGTGCTTTCTTCTTCTGTATTAACGGACCCGAGATAATGTCGAAATTGGCTGGGGAAAGTGAAAGCAATCTCAGAAAAGCATTTGAGGAAGCAGAGAAAAATGCTCCATCCATCATCTTTATTGATGAAATTGATTCAATTGCACCAAAAAGAGAGAAGACAAATGGAGAGGTTGAGAGACGTATTGTTTCCCAGCTTCTGACACTAATGGATGGGCTCAAATCTCGTGCGCATGTTATTGTCATTGGAGCGACTAATCGTCCTAACAGCATTGATCCTGCATTGAGAAGGTTTGGCAGATTTGACAGGGAAATCGACATTGGTGTTCCAGATGAAGTTGGGAGGCTTGAGATCCTTCGTATTCACACAAAAAACATGAAGCTTGCTGAAGATGTCGACCTTGAAAGGATTTCAAAGGAGACACATGGCTATGTTGGTGCTGATTTAGCTGCTTTATGTACTGAAGCAGCTCTTCAATGTATCAGAGAGAAGATGGATGTGATTGATTTGGAAGATGAGACAATTGATGCAGAGGTTCTCAATTCGATGGCTGTTACAAATGAACATTTCCAGACTGCTCTTGGACAGAGTAATCCATCTGCTCTGCGAGAAACAGTTGTTGAAGTACCGAATGTCAGTTGGGAGGATATTGGTGGCCTTGAAAATGTTAAGAGAGAGCTTCAAGAGACTGTACAATATCCTGTGGAGCATCCTGACAAATTTGAGAAATTCGGGATGTCACCTTCTAAGGGAGTTCTTTTCTATGGACCTCCTGGATGTGGAAAGACTTTGCTGGCCAAGGCTATTGCAAATGAATGTCAGGCAAACTTTATCAGTGTCAAGGGTCCTGAATTGCTAACGATGTGGTTCGGAGAGAGTGAGGCTAATGTTCGTGAGATTTTTGACAAGGCTCGGCAATCAGCTCCTTGTGTTCTATTTTTTGATGAGCTTGATTCAATTGCAACTCAGAGGGGAAGCAGTGTAGGTGATGCTGGTGGTGCTGCTGACAGGGTTTTGAATCAACTTTTGACTGAAATGGATGGAATGTCTGCCAAGAAGACTGTCTTTATTATTGGAGCCACAAATAGACCTGATATCATTGATCCAGCTCTTCTTCGACCTGGCCGTCTTGATCAACTAATCTATATTCCACTGCCAGATGAGGACTCCCGTTATCAGATATTCAAGGCTGCCCTGAGGAAGTCTCCTATTGCTAAAGATGTTGATCTTAGGGCACTTGCCAAGTACACTCAAGGTTTCAGTGGAGCAGATATCACTGAAATATGTCAACGTGCTTGCAAATATGCCATCAGGGAAAATATTGAGAAGGACATTGAAAGGGAGAGGAGAAGAAGTGAGAATCCCGAGGCCATGGAGGAGGACGTAGAGGACGAGGTTGCTGAAATCAAGGCTGCACACTTCGAGGAGTCGATGAAATTTGCCCGAAGGAGTGTAAGTGATGCTGATATACGCAAATATCAGGCATTTGCTCAGACTTTGCAGCAGTCTAGAGGATTTGGCACCGAGTTCCGTTTTGCAAATACAACTTCTGACACAACTGGAGGCACAGATGCATTTGCTGCCTCTGCTGGAGGAGCCGATGAAGACGATCTTTACAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11329.p1 GENE.S_Transcript_11329~~S_Transcript_11329.p1 ORF type:complete len:846 (+),score=240.62,AAA|PF00004.25|2.6e-48,AAA|PF00004.25|4.7e-47,CDC48_N|PF02359.14|5.6e-22,RuvB_N|PF05496.8|1e-05,RuvB_N|PF05496.8|1.4e-05,AAA_2|PF07724.10|3.2e-06,AAA_2|PF07724.10|0.0023,AAA_2|PF07724.10|6.9e+03,CDC48_2|PF02933.13|2.5e-12,AAA_16|PF13191.2|0.001,AAA_16|PF13191.2|0.00011,AAA_16|PF13191.2|4.3e+03,AAA_17|PF13207.2|3.7e-05,AAA_17|PF13207.2|0.012,AAA_17|PF13207.2|1.7e+03,AAA_22|PF13401.2|1.8e+03,AAA_22|PF13401.2|0.0056,AAA_22|PF13401.2|0.067,AAA_22|PF13401.2|8e+02,AAA_5|PF07728.10|6.2e-05,AAA_5|PF07728.10|0.023,AAA_33|PF13671.2|0.00019,AAA_33|PF13671.2|0.0083,AAA_14|PF13173.2|6.9e+03,AAA_14|PF13173.2|0.004,AAA_14|PF13173.2|0.029,TIP49|PF06068.9|0.00092,TIP49|PF06068.9|0.045,AAA_18|PF13238.2|0.0047,AAA_18|PF13238.2|0.064,AAA_25|PF13481.2|5.1,AAA_25|PF13481.2|0.17,AAA_25|PF13481.2|0.21,AAA_25|PF13481.2|7.2e+02,Arch_ATPase|PF01637.14|2.1,Arch_ATPase|PF01637.14|1.8,Arch_ATPase|PF01637.14|0.31,RNA_helicase|PF00910.18|0.73,RNA_helicase|PF00910.18|0.006,Mg_chelatase|PF01078.17|0.05,Mg_chelatase|PF01078.17|0.029,IstB_IS21|PF01695.13|0.2,IstB_IS21|PF01695.13|0.037,AAA_19|PF13245.2|0.056,AAA_19|PF13245.2|0.11,NACHT|PF05729.8|4.4,NACHT|PF05729.8|2.1e+03,NACHT|PF05729.8|0.3,NACHT|PF05729.8|64,ABC_tran|PF00005.23|5.9,ABC_tran|PF00005.23|0.017,KaiC|PF06745.9|7,KaiC|PF06745.9|7,KaiC|PF06745.9|2.2,KaiC|PF06745.9|1.1e+02,Viral_helicase1|PF01443.14|2.3e+03,Viral_helicase1|PF01443.14|37,Viral_helicase1|PF01443.14|0.0018 S_Transcript_11329:118-2538(+)
MADKPESSDSKGAKKDFSTAILERKKAPNRLVVDEAVNDDNSVVSMHPDTMEKLQLFRGDTVLVKGKKRRDTICIALADETCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIYCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERISKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGQSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPDKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRYQIFKAALRKSPIAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFANTTSDTTGGTDAFAASAGGADEDDLYN*

Click here to download the sequence:
Link to NCBI Protein BLAST