Transcript Information: S_Transcript_113470.p1


Annotated TAIR IDAT1G47500.1
Annotated Gene NameRNA-binding protein 47C'
Annotated Gene Symbol(s)ATRBP47C', RBP47C'
Annotation TypeOrtholog
Chromosome Positionchr1:17432682-17434805 | Forward length=434
E-Value8.9E-176
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 153.791034343719
Replicate 245.530852335253
Replicate 350.433639226492
Condition 2: 8 Hour
Replicate 146.318204446767
Replicate 248.638583879151
Replicate 347.700431795436
Condition 3: 24 Hour
Replicate 133.068793904021
Replicate 239.457166650966
Replicate 333.254542623306


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_113470.p1 GENE.S_Transcript_113470~~S_Transcript_113470.p1 ORF type:complete len:471 (+),score=82.14,RRM_1|PF00076.18|3.2e-12,RRM_1|PF00076.18|1e-15,RRM_1|PF00076.18|4.1e-19,RRM_6|PF14259.2|1.7e-05,RRM_6|PF14259.2|1.3e-05,RRM_6|PF14259.2|1.2e-14,RRM_5|PF13893.2|0.37,RRM_5|PF13893.2|4.2,RRM_5|PF13893.2|1.9e-09,RRM_7|PF16367.1|2.3e+03,RRM_7|PF16367.1|13,RRM_7|PF16367.1|0.0081 S_Transcript_113470:400-1812(+)
ATGCAGCAATCCAGTGGGAGCTCAGGGTCTGATCAGAACAACAACACCACCGCCACCAACAACAACAACGCCACCAGCCAGCCGCCAGCAACGGCGGGGGGACCACCAGGAGCTGCGGCTGCGTGGATGGCTGCGATGCAATACCCTGCGGCGGCTATGGTAATGCAACACCAGATGTTGCCTCAACATTACGCTCCTCCACCGCCTCACTACATGGCGGCTTACCATCCTCACCACCCTTATATGCAAGCCCCTCCTCCTCCGCCACCTCATCCCCACCACCATCACCAACAACATCGAAACAACAACAATAATAACCACCACCATAGCAATAATAATAATAACAACAGTCATAATAATAATGGCAACAATAATAACAGTAATAATAATAATGATGGGTCAATTGGTGAAAATAAGACCATTTGGGTCGGTGACTTGCATCATTGGATGGATGAGCTTTATCTCAGTAACTGTTTCTCTCGTGCCGGCGAGATAGCATCTGTAAAAGTTATCCGCAATAAACAGACTGGAGCATCAGAAGGATATGGATTTGTCGAATTCTTTACTCATGCTAATGCCGAGAAGGTTCTGCAGACACACGCAAGCATGTTGATGCCTAATACAGAGCAGCCTTTCCGTCTGAACTGGGCCACTTTCAGCATGGGCGATAAGCGCACAGACAATGGTTCTGATCTGTCCATATTCGTTGGGGATTTAGCAGCTGATGTTACTGATACCATGTTGCATGAATTATTTGCCAACAAATATCCTTCCGTTAAGGCTGCAAAAGTTGTCATTGATGCTAACACCGGTCGATCAAAAGGCTATGGTTTTGTGAGGTTTGGGGATGACAGTGAGAGGACACAAGCCATGACTGAAATGAACGGTGTCTATTGTTCAACTAGGCCAATGCGAATTGGTCCTGCTACTCCTCGGAAATCTCTAGGATATCAACAAGGTGGATATGCATCAAATGGTAATGGCCAAGGCGCACAATCTGATGGAGATTCATCAAACACAACAATATTTGTTGGAGGGCTTGATCCTAGCGTCACAGATGAGGAACTGAGGCAGCCCTTCTCCCAATACGGTGAAATAGTTTCTGTTAAAATCCCAGTTGGGAAAGGATGTGGCTTTGTTCAATTTGCAAACAGAGGCAATGCGGAAGAGGCTTTGAATAAGTTAAATGGCACTGTAATAGGCAAGCAAACCGTGCGTCTCTCCTGGGGCCGCAACCCAGCAAATAAGCAGTCAAGAGGTGACCATGCAAATCAGTGGAACGGAGGGTACTATGGAGGACACATGTACGATGGCTATGGATATGCACTACCTCACCCTCATGATCCAAGCATGTATGCAGCAGCAGCTTATGGGACATACCCCGTCTATGGCAATCAGCAGCAAGTAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_113470.p1 GENE.S_Transcript_113470~~S_Transcript_113470.p1 ORF type:complete len:471 (+),score=82.14,RRM_1|PF00076.18|3.2e-12,RRM_1|PF00076.18|1e-15,RRM_1|PF00076.18|4.1e-19,RRM_6|PF14259.2|1.7e-05,RRM_6|PF14259.2|1.3e-05,RRM_6|PF14259.2|1.2e-14,RRM_5|PF13893.2|0.37,RRM_5|PF13893.2|4.2,RRM_5|PF13893.2|1.9e-09,RRM_7|PF16367.1|2.3e+03,RRM_7|PF16367.1|13,RRM_7|PF16367.1|0.0081 S_Transcript_113470:400-1812(+)
MQQSSGSSGSDQNNNTTATNNNNATSQPPATAGGPPGAAAAWMAAMQYPAAAMVMQHQMLPQHYAPPPPHYMAAYHPHHPYMQAPPPPPPHPHHHHQQHRNNNNNNHHHSNNNNNNSHNNNGNNNNSNNNNDGSIGENKTIWVGDLHHWMDELYLSNCFSRAGEIASVKVIRNKQTGASEGYGFVEFFTHANAEKVLQTHASMLMPNTEQPFRLNWATFSMGDKRTDNGSDLSIFVGDLAADVTDTMLHELFANKYPSVKAAKVVIDANTGRSKGYGFVRFGDDSERTQAMTEMNGVYCSTRPMRIGPATPRKSLGYQQGGYASNGNGQGAQSDGDSSNTTIFVGGLDPSVTDEELRQPFSQYGEIVSVKIPVGKGCGFVQFANRGNAEEALNKLNGTVIGKQTVRLSWGRNPANKQSRGDHANQWNGGYYGGHMYDGYGYALPHPHDPSMYAAAAYGTYPVYGNQQQVS*

Click here to download the sequence:
Link to NCBI Protein BLAST