Transcript Information: S_Transcript_113588.p1


Annotated TAIR IDAT2G17525.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7624178-7626058 | Forward length=626
E-Value8.4E-258
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8078350823922
Replicate 23.3649223067279
Replicate 33.1027873599768
Condition 2: 8 Hour
Replicate 14.3254329416826
Replicate 24.5728621433403
Replicate 34.2229509406095
Condition 3: 24 Hour
Replicate 14.1216761303008
Replicate 24.2049210157374
Replicate 33.2915561094727


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_113588.p1 GENE.S_Transcript_113588~~S_Transcript_113588.p1 ORF type:complete len:636 (+),score=89.19,PPR_1|PF12854.3|32,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|6e+03,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|9.3e-09,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.031,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|7.5e-13,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.59,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|26,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|7.7e-05,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|7.9e-08,PPR_2|PF13041.2|5.4e-15,PPR_2|PF13041.2|3.5e-07,PPR|PF01535.16|55,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.047,PPR|PF01535.16|23,PPR|PF01535.16|6.6e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|7.6e-06,PPR|PF01535.16|0.016,PPR|PF01535.16|0.34,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|4e+03,PPR_3|PF13812.2|3.2e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|33,PPR_3|PF13812.2|43,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|1,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|0.00077,ATP13|PF12921.3|17,ATP13|PF12921.3|59,ATP13|PF12921.3|8.8e+02,ATP13|PF12921.3|3.6e+03,ATP13|PF12921.3|4.2e+03,ATP13|PF12921.3|1.8e+02,ATP13|PF12921.3|70,ATP13|PF12921.3|1.7 S_Transcript_113588:1273-3180(+)
ATGATATCTTCCAGACATCTCACCATTCCAAAGACTAAGATAACCCTTTTTAGTACCCTACATTACAAAACTATCTGCTCCACACCATCAACACCAACATCGACCACCCAATTGTCTCCACCAAGTCAGGAGCACATTGCTCATCTAATCCGAGACCAACAATCCGCCACCAAAGCCCTTGAAACATTTAGATGGGCATCACAGCTACCCAATTTTACTCACAGTCAATCCACTTACCGAGCTTTGATTCATAAGCTCTGCACTTTCCGTCGGTTCGATTATGTCCACCATGTGCTTGATGAAATACCAAGTTCCATTGTCTCACCCCCAAATGAAGATATTTTCATCACCATTGTCCGAGGTCTTGGACGGGCTGAAAGAATTCGACAAGTCATTGATGTTATTGATTTGGTTCCTAAGTTTGGGGTGATTCCATCTATCAAGATATATAATTCTATACTTGATGTCTTGGTTGAGAAAGATATTGATATTGCAAGGGAATTCTTTAGGAAGAAAATGATGGAGGGTGGTGTTCCTGTTCGAGGTGATGATTACACTTACGGGATATTGATGAAAGGACTTTGTTTGACGAACCGAATTGGGGATGGCTTTAAACTCTTACAACTGATGAAAACACGAGGTTTGACCCCAAATACAACAATTTATAACATGTTGCTTCACGCTCTTTGCAAGAATGGCAAGGTCAGTAGAGCTAGGAGTTTGATGAGTGAGATAGTAGAGCCCAATGACGTGACTTTTAATCTTATGATATCAGCATATTGTAAAGAACAAATTTTAGTTCAGGCGCTGGTGCTTTTGGAAAAAAGCTTTGCTTCAGGATATCTTCCTGAAGTTGTGACTTTGACAAAAGTGATACAACTGTTATGCAGTGTAGGCCATGCAAATGATGCTGCTGAAGTTTTGGACAGGACTGAAAGCAGTGGAGGTAGAACTGATGTTGTGGCATATAACACTCTGATCAAAGGATTTTGTAGCTTAGGGAAACCAAAAGTTGGGCTGCATTTTAAAAAACAAATGGAAAATAAAGGGTGTCTACCAAATGTAGGAACATATAATGCTTTAATAGCTGGGTTTTGTGACATTGGTTTGTTAGATTCAGCCCTTGATCTGTTCAATGAGATGAAAACAGATGCAATCAGCTGTAATTTTGTCACATATGATACCTTGATAAGAGGCTTTTGTTGTAAAGGGCAGGTAGAAGACGGGTTCAAAGTTTTGGAGCTCATGGAGGAGAGCAAAGGTGGTAGTGAAGGTCACATTAGTCCGTACAACAGTATCATTTATGGCCTATACCGTGAAAATCGTTGGAGTCAAGCTCTGGTCTTTTTTAACAAGATGGGAAAAATGTTTCCGCGAGCAGTTGACAGGACAGTGAAGATTCTAGCCTTTTGTGAAGAAGGGAACATAAAAAGTGCTAGGGAAGCTTATGACCAGATGATTCGTGAAGGTGGAATTCCTTGTGTTCTCGTCTACTCCAGCTTAATCCAGAGCTTTTGCCAGCAGAAGCATGTTCGAGAAGCATTTGTTTTGATGAATGAAATGGTTGATCATGATTATTCTCCTATTACACTAACGTACAATGCTCTTATTAGTGGACTTTGCAGTCAAGGGAGAATTATTAGTGCTCTGAAGCTTTTAGATGACATGGTTGAGAGAGGATGCCTAGCAGATGTCGGAACTTACAGCCCTTTAATCAATAGTCTTTGCAGCAAGGGGGATATACAAAAAGCTCTGAAGATTTTCCGCCAGTTGGTGGACGAAGGTATTAGGCCTGACTATAGTATTTGGAATTCGCTGGTGAATTACGCTAGCCAGGAGACTCCATGGCTAGAAGCCAAGAACTTTATTCATGTAAACAACCTTATACTAAAGATTATACAGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_113588.p1 GENE.S_Transcript_113588~~S_Transcript_113588.p1 ORF type:complete len:636 (+),score=89.19,PPR_1|PF12854.3|32,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|6e+03,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|9.3e-09,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.031,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|7.5e-13,PPR_1|PF12854.3|3.5e-08,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.59,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|26,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|1.1e-09,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|0.0049,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|7.7e-05,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|7.9e-08,PPR_2|PF13041.2|5.4e-15,PPR_2|PF13041.2|3.5e-07,PPR|PF01535.16|55,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.047,PPR|PF01535.16|23,PPR|PF01535.16|6.6e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|7.6e-06,PPR|PF01535.16|0.016,PPR|PF01535.16|0.34,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|4e+03,PPR_3|PF13812.2|3.2e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|33,PPR_3|PF13812.2|43,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|1,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|0.00077,ATP13|PF12921.3|17,ATP13|PF12921.3|59,ATP13|PF12921.3|8.8e+02,ATP13|PF12921.3|3.6e+03,ATP13|PF12921.3|4.2e+03,ATP13|PF12921.3|1.8e+02,ATP13|PF12921.3|70,ATP13|PF12921.3|1.7 S_Transcript_113588:1273-3180(+)
MISSRHLTIPKTKITLFSTLHYKTICSTPSTPTSTTQLSPPSQEHIAHLIRDQQSATKALETFRWASQLPNFTHSQSTYRALIHKLCTFRRFDYVHHVLDEIPSSIVSPPNEDIFITIVRGLGRAERIRQVIDVIDLVPKFGVIPSIKIYNSILDVLVEKDIDIAREFFRKKMMEGGVPVRGDDYTYGILMKGLCLTNRIGDGFKLLQLMKTRGLTPNTTIYNMLLHALCKNGKVSRARSLMSEIVEPNDVTFNLMISAYCKEQILVQALVLLEKSFASGYLPEVVTLTKVIQLLCSVGHANDAAEVLDRTESSGGRTDVVAYNTLIKGFCSLGKPKVGLHFKKQMENKGCLPNVGTYNALIAGFCDIGLLDSALDLFNEMKTDAISCNFVTYDTLIRGFCCKGQVEDGFKVLELMEESKGGSEGHISPYNSIIYGLYRENRWSQALVFFNKMGKMFPRAVDRTVKILAFCEEGNIKSAREAYDQMIREGGIPCVLVYSSLIQSFCQQKHVREAFVLMNEMVDHDYSPITLTYNALISGLCSQGRIISALKLLDDMVERGCLADVGTYSPLINSLCSKGDIQKALKIFRQLVDEGIRPDYSIWNSLVNYASQETPWLEAKNFIHVNNLILKIIQT*

Click here to download the sequence:
Link to NCBI Protein BLAST