Transcript Information: S_Transcript_113934.p1


Annotated TAIR IDAT5G28823.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type) family protein (TAIR:AT2G07760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10837849-10839826 | Reverse length=568
E-Value1E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5967800741108
Replicate 20.29417052743353
Replicate 30.98361259112536
Condition 2: 8 Hour
Replicate 10.14216926878089
Replicate 20.89487394558906
Replicate 31.7052678083985
Condition 3: 24 Hour
Replicate 10.58253022641584
Replicate 21.5109207717565
Replicate 31.8496165897085


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_113934.p1 GENE.S_Transcript_113934~~S_Transcript_113934.p1 ORF type:complete len:150 (+),score=26.92,DUF4283|PF14111.2|1.8e-20 S_Transcript_113934:716-1165(+)
ATGGAGGGAGGACTGTGGTATGTGGGGAATTATATGATGATTTTGAAGCACTGGACTCCTAATTTCAGCTCAGAAATGGATGGATTGATTAAAGTTCCTATGTGGGTCATTCTTCCAAACCTAGACCCCTATTTCTGGTCTGCTACTGCTTTAAGCAAAATTGTAAGTAGATTGGGTAAACCCTTGTTTGCTGATCAGTACACTACTTCGGAAACTAAGATTTCTTTTTCTAGAATACTTGTGGAGATGGATGTTTCTGGCGACATTCCAATGTCTTTGCTAGTCAAGACACCTTTTGGTGGGGTAACTGAGCAGGCGGTGAAGTATGAATGGATGTATGCAGGAAGTTGGGACATACTAAGGGGCAATGCAGAAAGGCTAAAGAGGAAGAAAAGAAAGTGGAGCACTCAAAAGTGCAGGGGGTATGGAGGAGGAGGGTCAGATCGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_113934.p1 GENE.S_Transcript_113934~~S_Transcript_113934.p1 ORF type:complete len:150 (+),score=26.92,DUF4283|PF14111.2|1.8e-20 S_Transcript_113934:716-1165(+)
MEGGLWYVGNYMMILKHWTPNFSSEMDGLIKVPMWVILPNLDPYFWSATALSKIVSRLGKPLFADQYTTSETKISFSRILVEMDVSGDIPMSLLVKTPFGGVTEQAVKYEWMYAGSWDILRGNAERLKRKKRKWSTQKCRGYGGGGSDR*

Click here to download the sequence:
Link to NCBI Protein BLAST