Transcript Information: S_Transcript_11417.p1


Annotated TAIR IDAT5G38600.1
Annotated Gene NameProline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:15457386-15460466 | Forward length=532
E-Value2E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 31.8868805894113
Condition 2: 8 Hour
Replicate 10.63342743516237
Replicate 21.1075172593924
Replicate 30
Condition 3: 24 Hour
Replicate 11.5140018260808
Replicate 20.59838446406198
Replicate 31.1653749890153


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11417.p1 GENE.S_Transcript_11417~~S_Transcript_11417.p1 ORF type:5prime_partial len:303 (+),score=47.46,PSP|PF04046.12|2.6e-15 S_Transcript_11417:3-911(+)
AAAAGGCAACGCAAGGACTTGCTACAAACGGACAATGGGTGCTCACCTATGTACGATAGAGGATATGCTATTGGCTTGGCTTCTGACGAGGGAGTCAGTGAAGGCAGTGACCGGGATTTGCGTGAGGCTTTTCGTTGCTTCAATTGTGGTTCATATAACCATCCACTGAGTGATTGTCCAAAGCCTCGTGATACCGCGGCTGTAAATAGTGCTCGGAAACAATTTCTAAGCAAGAAGAGCCATAGTGCTGGTCCTCGTGTCCCAACCCGATATTACCAAGAATCTCCTGGTGGCAAGTTTGACGGACTTAAACCTGGTGCTCTTTCAGCTGAAACAAGGACATTGCTGGGTCTTGGGGAGCTCGATCCACCTCCATGGCTTTACAGGATGCGGGAACTTGGGTATCCGCCTGCATATTTAGATCGAGAAGAAGAGGATCAACCTTCAGGAATTACAATTTTTGGTGACGAGGAACCTCATGATACGGCCTTGAAGAATGGCCTTCCATCAAAAAAATCCAGTAAGAAAATGAATGTAGACTTCCCAGGAATTAATGCCCCTATACCAGAAAACGCTGATCAGTGGCGTTGGGCAGCACCTGCACCTACACCTAGTGGTCCACCGCATTCTGATATTTCCTGGAACCAGTCGCACAACAGACAGAATTATCCTCAACAGTCCTTCAATAATGGGCATTTCCATCGTGATTATAGACAAAGAAATTATGCTCAAACCCCATCGTATCACTTTGGCCCTGGGTCAAGCCCCCCTTTATCTCACTTTCGACATGACTATCCTCCAAGTGAATCTGTCAGCCCGAGAGGTATTCCAATTCCAGCAAATGCCGCTTATGGGAGGTCACCAGATTCAGGTAGACCTTTTCTGAATTATAATTATGGTAGTTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11417.p1 GENE.S_Transcript_11417~~S_Transcript_11417.p1 ORF type:5prime_partial len:303 (+),score=47.46,PSP|PF04046.12|2.6e-15 S_Transcript_11417:3-911(+)
KRQRKDLLQTDNGCSPMYDRGYAIGLASDEGVSEGSDRDLREAFRCFNCGSYNHPLSDCPKPRDTAAVNSARKQFLSKKSHSAGPRVPTRYYQESPGGKFDGLKPGALSAETRTLLGLGELDPPPWLYRMRELGYPPAYLDREEEDQPSGITIFGDEEPHDTALKNGLPSKKSSKKMNVDFPGINAPIPENADQWRWAAPAPTPSGPPHSDISWNQSHNRQNYPQQSFNNGHFHRDYRQRNYAQTPSYHFGPGSSPPLSHFRHDYPPSESVSPRGIPIPANAAYGRSPDSGRPFLNYNYGSL*

Click here to download the sequence:
Link to NCBI Protein BLAST