Transcript Information: S_Transcript_115111.p1


Annotated TAIR IDAT4G37930.1
Annotated Gene Nameserine transhydroxymethyltransferase 1
Annotated Gene Symbol(s)SHM1, STM, SHMT1
Annotation TypeOrtholog
Chromosome Positionchr4:17831891-17834742 | Reverse length=517
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.3638337679339
Replicate 25.5565544070778
Replicate 34.0983857963557
Condition 2: 8 Hour
Replicate 15.7262622147857
Replicate 25.510103461266
Replicate 36.3947542814944
Condition 3: 24 Hour
Replicate 11.9822209093317
Replicate 23.1057815863883
Replicate 34.6240414742713


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_115111.p1 GENE.S_Transcript_115111~~S_Transcript_115111.p1 ORF type:complete len:540 (+),score=112.19,SHMT|PF00464.15|1.7e-209 S_Transcript_115111:61-1620(+)
ATGGCGATGGCAATGACCCTTCGTAGGCTCTCCTCTTCTTCGTCGAACACCTCCTTTCGTTCTCTCTTCAATGGGCCCACTACGTACCATATGTCTTGTTTGTCTAGCCAAGCTGCTCTTAACATAGATCGATCTCGCGTTAATTGGATAAGGCAGCTGAATGAACCGCTTGAGGTTATTGATCCTGAAATTGCTGACATTGTTGAGTTGGAGAAAGCCCGCCAATGGAAGGGGCTTGAGCTTATCCCATCGGAGAACTTCACCTCAGTTTCAGTAATGCAAGCAGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGATATCCGGGTGCTAGATACTATGGAGGAAATGAGTACATTGATATGGCCGAAACATTATGTCAGAAGAGGGCACTCGAAACATTTCGTTTGGATCCTGCAAAATGGGGAGTCAATGTGCAATCCCTATCTGGATCACCAGCCAACTTTCAAGCTTATACTGCACTTTTGAAGCCACATGAGAGAATCATGGCACTTGATCTTCCTCATGGCGGGCACCTCTCACATGGCTATCAGACTGACACTAAGAAGATATCTGCTGTGTCCATTTTCTTTGAGACAATGCCATACAGATTAGACGAGAGCACTGGATATATTGATTACGAGCAGCTGGAGAAGAGTGCTGCTCTTTTTAGGCCAAAATTAATAGTTTCTGGCGCAAGTGCTTATGCCCGCCTTTATGACTATGCACGGATCAGAAAGGTTTGTGACAAGCAAAAAGCTATCATGCTAGCAGATATGGCACATATAAGTGGTTTGGTTGCTGCTGGTGTCATTCCTTCTCCTTTTGAGTATGCAGATATAGTGACAACTACAACACACAAATCTCTGCGAGGACCACGAGGGGCCATGATATTTTTCAGGAAGGGTGTAAAGGAGATAAACAAGCAAGGGAAGGAAGTAATGTATGACTTTGAAGACAAGATCAATCAGGCCGTCTTTCCTGGACTTCAGGGTGGACCACATAATCATACAATTACTGCCTTGGCTGTTGCATTGAAACAGGCTATGACCCCCGAATACAAAGCATATCAAGAACAAGTGCTAAGTAACTGCTCTGCATTTGCCCAGAGCTTGAACAAAAAAGGGTATGACCTGGTATCTGGAGGGACTGATAACCATCTAGTCTTGGTAAACCTAAGAGACAAGGGGATTGATGGATCAAGGGTTGAAAAGGTCCTGGAAGCTGTTCATATTGCAGCTAATAAAAATACGGTTCCTGGAGATGTGTCAGCCATGATTCCTGGAGGCATTCGTATGGGAACCCCAGCTCTAACATCAAGAGGATTTATCGAAGAAGATTTTGCGAAAGTGGCAGATTTCTTTGATGCTGCTGTGAAGTTGGCATTAAAGATCAAGTCTGAGACAACAGGGACGAAGTTGAAGGATTTTGTGGCAACTATGCAATCTGATGCCAACATTCAATCTGAGATTGCAAAGCTCCGAGGAGAAGTTGAGGAATATGCAAAGCAATTCCCAACCATTGGCTTTGAGAAGGAGACGATGAAATACAAGGACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_115111.p1 GENE.S_Transcript_115111~~S_Transcript_115111.p1 ORF type:complete len:540 (+),score=112.19,SHMT|PF00464.15|1.7e-209 S_Transcript_115111:61-1620(+)
MAMAMTLRRLSSSSSNTSFRSLFNGPTTYHMSCLSSQAALNIDRSRVNWIRQLNEPLEVIDPEIADIVELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALETFRLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYEQLEKSAALFRPKLIVSGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVMYDFEDKINQAVFPGLQGGPHNHTITALAVALKQAMTPEYKAYQEQVLSNCSAFAQSLNKKGYDLVSGGTDNHLVLVNLRDKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFIEEDFAKVADFFDAAVKLALKIKSETTGTKLKDFVATMQSDANIQSEIAKLRGEVEEYAKQFPTIGFEKETMKYKD*

Click here to download the sequence:
Link to NCBI Protein BLAST