Transcript Information: S_Transcript_115261.p1


Annotated TAIR IDAT1G56690.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21253817-21255931 | Forward length=704
E-Value4.6E-304
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.9043252846906
Replicate 20.49980429418318
Replicate 30.44763922533011
Condition 2: 8 Hour
Replicate 12.0014120362358
Replicate 22.3892265537572
Replicate 32.0694997674739
Condition 3: 24 Hour
Replicate 10.67160645035807
Replicate 20.66011101678682
Replicate 30.89787213092646


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_115261.p1 GENE.S_Transcript_115261~~S_Transcript_115261.p1 ORF type:5prime_partial len:618 (+),score=143.49,PPR|PF01535.16|0.0028,PPR|PF01535.16|4.5e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|6.8e-09,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|0.00087,PPR|PF01535.16|0.012,PPR|PF01535.16|0.94,PPR|PF01535.16|2.6e-08,PPR|PF01535.16|0.27,PPR|PF01535.16|0.19,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.25,PPR|PF01535.16|1.6e+04,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|3.3e-06,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|1.9e-06,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|0.0055,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.9e-11,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.8,PPR_2|PF13041.2|18,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.00026,PPR_1|PF12854.3|4.1e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|5e-06,PPR_1|PF12854.3|0.069,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|7.4,PPR_1|PF12854.3|10,PPR_1|PF12854.3|8.7e+02,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|0.095,PPR_3|PF13812.2|5,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.26,DYW_deaminase|PF14432.2|1e-39,TPR_14|PF13428.2|6.8e+03,TPR_14|PF13428.2|2.6e+02,TPR_14|PF13428.2|56,TPR_14|PF13428.2|1.7e+03,TPR_14|PF13428.2|4.2e+02,TPR_14|PF13428.2|38,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|3e+03,TPR_14|PF13428.2|1.6e+04 S_Transcript_115261:2-1855(+)
GGGTATGTGAAAAACAAGATGATAGATGAAGCACGTAAGGTGTTTGATTCAATGCCTGAGAGAAATGTGGTTTCTTGGACATCAATGTTAAGAGGGTATGTGCAAGAGGGTATGATGTCGGAGGCGAGTTTGTTGTTTGATACGATGCCTGAGAAGAATGTGATTTCATGGACTGTGATGATTGGTGGACTGATTCGTGTGGGCGAGATTGAGGAGGCAAGGAGGCTTTTTGATAGCATGCCCTTGAAAGATGTGGTTGCATGGACTACCATGATTGCTGGGCATTGTCAGGCGGGAAGGTTGGCTGAAGCGAGGGAGCTTTTCGATGAGATGCCCAAGAGGAATGTCATTTCTTGGACCACTATGATAAATGGTTATGCAGAAAATAATAAGGTGGATGTTGCTAGGAAGCTTTTTGAGGTGATGCCTGAGAGGAATGAGGTTTCTTGGACTGCAATGCTGATGGGTTATGCTCGATGTGGACGAATGCAAGAGGCCTCAGAGCTCTTTGATGCTATGCCTGTTAAGTCAGTTGGTACCTGTAACGGAATGATTATCGGGCATGGACAAAATGGGGATGTGGCCAAGGCAAGGAAAACGTTTGAGAATATGGAGAGAAGAGATGATTGGACATGGTGTGCAATGCTCAAGGTGTATGAAAGAAATGGTTTTGAGTTGGATGCTTTGCATATGTTTTCTGTAATGCAACATGAGGGATTTCGGCCAAATTTCCCTGCTTTGATTAGCATTCTCTCAGTTTGTGGGAGTCTGGCTAGTCTTTCTCATGGTAGACAAATTCATGCACAATTGATGAGGGGCAACTTTGATGGTGATGTCTTCATTTCGTCTGTTCTGCTCACCATGTATGTGAAATGTGGTGATCTGATAAAGGCAAAACTAGTGTTTGACAGGTTTGCAATGAAGGATGTTGTTATGTGGAATTCTATCATCACAGGCTATGCACAACATGGCTTAGCAGATGAAGCCTTGGATTACTTCTATCAAATGGTGTCAGCAGGCATTACTCCTGATGATGTTACATTTGTGGGTGTTCTTACAGCATGTAGCTACTCAGGGAGGGTGAAAGAAGGACGTCAGATCTTTGAATCGATGAAAACTAGGTATCAATTAGAACCAGGAGTTGAACACTGTGCTTGCATGGTTGATCTTCTTGGTAGAGCCGGCCTCTTCAGTGAAGCCATGGATTTGATACATAACATGCATATAAAAGCAGATGCCGTCGTCTGGGGTGCATTGTTAGGTGGCTGCAAAATCCATATGAACATTGATCTGGCTGAAGTGGCAGCAAAGAAACTTGTAGAGCTTGAACCAAAAAATTCTGGTCATTACACCTTGCTCTCTAACATTTATGCATCAAAAGGTAGATGGCATGATGTTACCGAGGTAAGAAAGAAAATGAAAGCCAGAAAAGTGAAAAAATCTCCAGGTTGTAGCTGGATTGAGGTTGAGAAGGAAGTGCATATGTTTACTGGTGGGGATAGTGAGGCTCATCCTGATTATGCATTGATATTAAGAATGTTAGAAAGCTTAATTGGGAGGTTAAGAGAAGTTGGGTATCATCCGGATGCTAGCTTTTCCCTGCATGACTTGGACGATGAAGACAAGGCAACCTCTGTGAGCTTTCATAGTGAGAAACTTGCTGTGGCATATGGACTTTTGAAGGTGCCTCCTGGAATGCCCATCCGTGTCATGAAAAACCTAAGGGTATGTGGTGATTGCCATACTGCTATCAAACTAATATCGAAAGTCACTGGTCGGGAGATCATATTAAGAGATGCCAATAGATTTCATCATTTTAAAGATGGCTTGTGCTCTTGTAAAGACTATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_115261.p1 GENE.S_Transcript_115261~~S_Transcript_115261.p1 ORF type:5prime_partial len:618 (+),score=143.49,PPR|PF01535.16|0.0028,PPR|PF01535.16|4.5e-07,PPR|PF01535.16|2e-05,PPR|PF01535.16|6.8e-09,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|0.00087,PPR|PF01535.16|0.012,PPR|PF01535.16|0.94,PPR|PF01535.16|2.6e-08,PPR|PF01535.16|0.27,PPR|PF01535.16|0.19,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.25,PPR|PF01535.16|1.6e+04,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|3.3e-06,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|1.9e-06,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|0.0055,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.9e-11,PPR_2|PF13041.2|16,PPR_2|PF13041.2|4.8,PPR_2|PF13041.2|18,PPR_1|PF12854.3|1,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.00026,PPR_1|PF12854.3|4.1e-11,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|5e-06,PPR_1|PF12854.3|0.069,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|7.4,PPR_1|PF12854.3|10,PPR_1|PF12854.3|8.7e+02,PPR_3|PF13812.2|34,PPR_3|PF13812.2|0.73,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|0.0073,PPR_3|PF13812.2|0.095,PPR_3|PF13812.2|5,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.26,DYW_deaminase|PF14432.2|1e-39,TPR_14|PF13428.2|6.8e+03,TPR_14|PF13428.2|2.6e+02,TPR_14|PF13428.2|56,TPR_14|PF13428.2|1.7e+03,TPR_14|PF13428.2|4.2e+02,TPR_14|PF13428.2|38,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|3e+03,TPR_14|PF13428.2|1.6e+04 S_Transcript_115261:2-1855(+)
GYVKNKMIDEARKVFDSMPERNVVSWTSMLRGYVQEGMMSEASLLFDTMPEKNVISWTVMIGGLIRVGEIEEARRLFDSMPLKDVVAWTTMIAGHCQAGRLAEARELFDEMPKRNVISWTTMINGYAENNKVDVARKLFEVMPERNEVSWTAMLMGYARCGRMQEASELFDAMPVKSVGTCNGMIIGHGQNGDVAKARKTFENMERRDDWTWCAMLKVYERNGFELDALHMFSVMQHEGFRPNFPALISILSVCGSLASLSHGRQIHAQLMRGNFDGDVFISSVLLTMYVKCGDLIKAKLVFDRFAMKDVVMWNSIITGYAQHGLADEALDYFYQMVSAGITPDDVTFVGVLTACSYSGRVKEGRQIFESMKTRYQLEPGVEHCACMVDLLGRAGLFSEAMDLIHNMHIKADAVVWGALLGGCKIHMNIDLAEVAAKKLVELEPKNSGHYTLLSNIYASKGRWHDVTEVRKKMKARKVKKSPGCSWIEVEKEVHMFTGGDSEAHPDYALILRMLESLIGRLREVGYHPDASFSLHDLDDEDKATSVSFHSEKLAVAYGLLKVPPGMPIRVMKNLRVCGDCHTAIKLISKVTGREIILRDANRFHHFKDGLCSCKDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST