Transcript Information: S_Transcript_115609.p1


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeHomolog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99090962045885
Replicate 22.2297500084722
Replicate 32.7467904805363
Condition 2: 8 Hour
Replicate 13.0626890349074
Replicate 23.688975041657
Replicate 34.6486688925757
Condition 3: 24 Hour
Replicate 13.4858856633927
Replicate 21.4466262708307
Replicate 32.8173560239757


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_115609.p1 GENE.S_Transcript_115609~~S_Transcript_115609.p1 ORF type:5prime_partial len:188 (-),score=30.04 S_Transcript_115609:472-1035(-)
AGAACACACTCACCTTGCGGTACCTTTCGTGTATCTAATGGTTTTGTAAATGGTGAAACTTCTTCGAAGTATGATAATGGATTTGGTAAGTCAAGCTACCCAATTGGAAATAGTGACTGTAAAGCAATAAAATTTAAAAGGAATCCTGTTTCAATGGGTACTGTTTCAAATGTGCTTGGGAAAAATTATGTGTGGCGTCCTCGGACAAATATAATTTCCAATATAACAAAGCCATTGGACATAGAAGAAAACAAGTCGTCGGGCTTGCATTCTTCTCAAGAGTCTGTATCAGAAAAGGGCAATGTTGCTAATTCGAACCAGGACATCGAGAATTTTCTCTTTGAAATGCTTGGACAGGGTTTTCAGCTTGAGAGGAGTGCTATTCGTGAAGTCTTAGGTCATTGTGGATATGACATGAAGATGAGCTTGGAGACACTGCTGGATCTTACAGCTGCAACTCTTGATAGCAGGAATGACTTTCATGTGGTAACATTGTCAACCAAGATGAAGAGGATGAATATGAGATCCTTCGCAAAGCTGTTAGGGAATATCGTGATGCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_115609.p1 GENE.S_Transcript_115609~~S_Transcript_115609.p1 ORF type:5prime_partial len:188 (-),score=30.04 S_Transcript_115609:472-1035(-)
RTHSPCGTFRVSNGFVNGETSSKYDNGFGKSSYPIGNSDCKAIKFKRNPVSMGTVSNVLGKNYVWRPRTNIISNITKPLDIEENKSSGLHSSQESVSEKGNVANSNQDIENFLFEMLGQGFQLERSAIREVLGHCGYDMKMSLETLLDLTAATLDSRNDFHVVTLSTKMKRMNMRSFAKLLGNIVMQ*

Click here to download the sequence:
Link to NCBI Protein BLAST