Transcript Information: S_Transcript_115992.p1


Annotated TAIR IDAT5G62950.1
Annotated Gene NameRNA polymerase II, Rpb4, core protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25262355-25263033 | Reverse length=139
E-Value7E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5645403046779
Replicate 26.0304958123874
Replicate 36.2705302684242
Condition 2: 8 Hour
Replicate 16.5397863639208
Replicate 27.9047198527034
Replicate 38.3842333912927
Condition 3: 24 Hour
Replicate 14.3689766981188
Replicate 28.3100642446607
Replicate 35.8851436945271


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_115992.p1 GENE.S_Transcript_115992~~S_Transcript_115992.p1 ORF type:5prime_partial len:150 (+),score=31.85,RNA_pol_Rpb4|PF03874.12|2.4e-20 S_Transcript_115992:1-450(+)
ATCGTCATGAAAATTAAGAAAGCCAATGCTGGTCCCCTGACTAATTTCGAAGTACTTGATTTCTTACGATCTAGAGGGGCATCAACGGATACTAATACTCGTGTCATGTCTCCTGTATTGGATTCTGAGTTCAAGGTATTTGATTATTTGGTTAATGGCCCTGCTTGTAATCAGACTAGAGAAAGTATAAATGAATGTGTTGAGAAATCGAAAGAGTACCAGTTAGCAAAAGCTGAGATTATGAGCATCATCAACATCAGGCCCACTTCTGCAGTTGAACTTGCAACGATGATAGAGGAATGGGATAAGCGTATGGAAGACAGAATCGAAGAACTGGCAGAGATGATAGGTCAATTTTTGCCACCCCTGCCGAACTCAGATCAGGAAGCTGCTGCAGATGATTCTGCAGAGGGAGCAGAAGGGGAGCAGGTGGAAACCGAAGATGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_115992.p1 GENE.S_Transcript_115992~~S_Transcript_115992.p1 ORF type:5prime_partial len:150 (+),score=31.85,RNA_pol_Rpb4|PF03874.12|2.4e-20 S_Transcript_115992:1-450(+)
IVMKIKKANAGPLTNFEVLDFLRSRGASTDTNTRVMSPVLDSEFKVFDYLVNGPACNQTRESINECVEKSKEYQLAKAEIMSIINIRPTSAVELATMIEEWDKRMEDRIEELAEMIGQFLPPLPNSDQEAAADDSAEGAEGEQVETEDG*

Click here to download the sequence:
Link to NCBI Protein BLAST