Transcript Information: S_Transcript_116153.p1


Annotated TAIR IDAT5G06400.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1955959-1959051 | Forward length=1030
E-Value1.3E-166
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8288687389869
Replicate 24.1931056530268
Replicate 33.7344083721678
Condition 2: 8 Hour
Replicate 13.9393260976587
Replicate 24.4107907620065
Replicate 35.1491212686989
Condition 3: 24 Hour
Replicate 14.7725056293838
Replicate 23.9047774829586
Replicate 34.8831311548093


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116153.p1 GENE.S_Transcript_116153~~S_Transcript_116153.p1 ORF type:5prime_partial len:563 (+),score=95.48,PPR_2|PF13041.2|0.0023,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|2.1e-07,PPR_2|PF13041.2|3.3e-13,PPR_2|PF13041.2|5.6e-09,PPR_2|PF13041.2|4.7e-07,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|9.4e-05,PPR_1|PF12854.3|42,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|4.5e-07,PPR_1|PF12854.3|3.9e-06,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|1.7e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.026,PPR|PF01535.16|31,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|0.027,PPR|PF01535.16|4.6e-05,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.034,PPR|PF01535.16|9.7e+03,PPR_3|PF13812.2|79,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.32,TPR_19|PF14559.2|13,TPR_19|PF14559.2|39,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.5e+02 S_Transcript_116153:2-1690(+)
TTGGTTCTAATTTGGGGCTTTGTCATCAAGAGTTCAAGACCCCCCTTCTCAAAACTTCATTCTTCATCTACTAATCCTAACACCATTCATTCAATTCAAAAACCAAACCAATTTCACTCCCAAATGTTGTTGGGAAGGGCAACTCGTGATCATCATTTACTAACACCATCATCCATCGCATCATCATCTCCATTTCACAAGCTTTCTGCTTTTAGACTGTTATTATTACATTCACTTGGAACCCCAATTTCTTCAACTTCCCCAAATCCCACAAAAATTTTGCTTCTCAAAAATTCCAACTTACCCAGTTCCCCTGTTGGTCTTCCTTCACTTTCTAGCTCCTTCAGCTCATCCCCCACTTTGTTGGGTCATCCTCCTCTCCATGCACAAGCTTCCTTTGATGATCAAAAAAGCACTTACAATGATGAAGATGTGCATAAGATTTTTGCCATTTTGTCATCATCAAAGGATTGGTCAGCAATGCAAGAAGCTGTAGAGAAATGCACGATTCATTATAGCCCAGAACTTGTCCTCAAGATCCTGTACAACTGTAGCCAGTATGGTAATGCTGTACTACATTTTTTCTCATGGGTTAGAAAACAACCTGGTTATAAACACACTACAGAATGTTACAACATGGCTATGAAGATAGCTGGTCGAGGGAAAGATTTTAAATTCATGAGAAATCTCTTTTATGAAATGCAAAGAAATGGTTGCTTGGTAACTTCTGATACATGGACAATCATGATAATGTCATATGGTCGGGTGGGGCTGACTGATATTGCATTGAGGAACTTTAATGAGATGAAAGTTACTGGTTGCCAGCCGACCGCAAATACATACAAGTATCTGATCTTGTCCCTTTGTGGGAGAAAAGGTAGGAATGTGGATGAAGCCATCAAAGTATTTAAGGAGATGAGTAAGAAAGGATTGGTTCCAGATAAAGAACTGGTTGAAGGTTTCTTTGATAGTCTGTGCCAAGTAGGAAAGTGGGCAGATGCAAGAAAGTGCTTGGAAATCTTGCAAAAAGTCGGTTTTACAAAGGTTTTAAGCTATTCTTTGCTTATTAGGGCTCTTTGTCGTAGAGGAAAATTGGAAGAAGCATTGTCCCTGACAAATGATGTTAAAGAAGAAAGATCCACCCTTGATACTTATGTCTATGGAAGCCTTGTTCATGGGCTTTTAGAGAAGGGAAGAATAGATGAAGCCTTGGCCAAAATTGAGACCATGAAACGGGGAGGTATTCATCCAACTGTCCATGTCTATACGTCATTAATATCTCATTTCTGTAGGGACAAACAGATAGATAAAGCTCTGGATGTATTTAGCACCATGTGGGAAGAGCATTGTCATCCTACTATTGTTACTTACACTGCATTGGTACGTGGGTATATGAACATGGGGAATGTTGTTGAAGCTCAAAAGTTGTTCCTTCGGATAAGGCTAAAAGGACCATCTCCAGATTTTAGGGCTTACTCAATGTTTATTGCGGGCCTTTGTGAGATGGGGAAATCTGAAGCAGCACTGCCGTTGTTATCTGAAATGTTAGACGATGGCATTATGCCTAGCACTGTTAATTTCCGAACTGTGTTCTTTGGACTGAACAAGGAAGGCAAACACCATTTAGCTCGAACAGTAATGCAACTAAAGCGTGCCATTGCAAATAAAAGGAAGTTTCTAACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116153.p1 GENE.S_Transcript_116153~~S_Transcript_116153.p1 ORF type:5prime_partial len:563 (+),score=95.48,PPR_2|PF13041.2|0.0023,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|1.8e-07,PPR_2|PF13041.2|2.1e-07,PPR_2|PF13041.2|3.3e-13,PPR_2|PF13041.2|5.6e-09,PPR_2|PF13041.2|4.7e-07,PPR_1|PF12854.3|0.004,PPR_1|PF12854.3|9.4e-05,PPR_1|PF12854.3|42,PPR_1|PF12854.3|0.00047,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|4.5e-07,PPR_1|PF12854.3|3.9e-06,PPR_1|PF12854.3|0.00023,PPR_1|PF12854.3|1.7e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.00049,PPR|PF01535.16|0.026,PPR|PF01535.16|31,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|0.027,PPR|PF01535.16|4.6e-05,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.034,PPR|PF01535.16|9.7e+03,PPR_3|PF13812.2|79,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|7.7,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|0.32,TPR_19|PF14559.2|13,TPR_19|PF14559.2|39,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.5e+02 S_Transcript_116153:2-1690(+)
LVLIWGFVIKSSRPPFSKLHSSSTNPNTIHSIQKPNQFHSQMLLGRATRDHHLLTPSSIASSSPFHKLSAFRLLLLHSLGTPISSTSPNPTKILLLKNSNLPSSPVGLPSLSSSFSSSPTLLGHPPLHAQASFDDQKSTYNDEDVHKIFAILSSSKDWSAMQEAVEKCTIHYSPELVLKILYNCSQYGNAVLHFFSWVRKQPGYKHTTECYNMAMKIAGRGKDFKFMRNLFYEMQRNGCLVTSDTWTIMIMSYGRVGLTDIALRNFNEMKVTGCQPTANTYKYLILSLCGRKGRNVDEAIKVFKEMSKKGLVPDKELVEGFFDSLCQVGKWADARKCLEILQKVGFTKVLSYSLLIRALCRRGKLEEALSLTNDVKEERSTLDTYVYGSLVHGLLEKGRIDEALAKIETMKRGGIHPTVHVYTSLISHFCRDKQIDKALDVFSTMWEEHCHPTIVTYTALVRGYMNMGNVVEAQKLFLRIRLKGPSPDFRAYSMFIAGLCEMGKSEAALPLLSEMLDDGIMPSTVNFRTVFFGLNKEGKHHLARTVMQLKRAIANKRKFLTS*

Click here to download the sequence:
Link to NCBI Protein BLAST