Transcript Information: S_Transcript_11620.p1


Annotated TAIR IDAT5G04430.2
Annotated Gene Namebinding to TOMV RNA 1L (long form)
Annotated Gene Symbol(s)BTR1, BTR1L
Annotation TypeOrtholog
Chromosome Positionchr5:1250602-1253523 | Reverse length=334
E-Value1.7E-133
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 154.166391206586
Replicate 249.348925052675
Replicate 353.633822603545
Condition 2: 8 Hour
Replicate 144.082520620222
Replicate 247.826743558426
Replicate 343.460226388955
Condition 3: 24 Hour
Replicate 138.363629310337
Replicate 246.689053530072
Replicate 341.531705628212


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11620.p1 GENE.S_Transcript_11620~~S_Transcript_11620.p1 ORF type:complete len:283 (+),score=66.00,KH_1|PF00013.25|7.2e-14,KH_1|PF00013.25|3.7e-14,KH_1|PF00013.25|2.4e-13,KH_3|PF13014.2|4.6e-11,KH_3|PF13014.2|7.2e+03,KH_3|PF13014.2|9.3e-08,KH_3|PF13014.2|2.4e-09,KH_2|PF07650.13|0.002,KH_2|PF07650.13|0.039,KH_2|PF07650.13|0.0016,KH_4|PF13083.2|1.6,KH_4|PF13083.2|0.0082,KH_4|PF13083.2|0.017 S_Transcript_11620:173-1021(+)
ATGGAGAAGCCTACATATGTCAAGTTCCTTGTGTCAAATGCTTCCGCTGGTTCAGTTATTGGCAAAGGTGGCTCCACAATAACAGATTTTCAAAAGGACTCTGGAGCACGGATTCAGTTATCCCGTAATCATGAGTTTTTCCCGGGAACTGCTGATAGAATTATTATGGTATCTGGAAAGATTGAGGATGTACTGAAGGCAGTGGACCTTATCCTTAATAAACTGCTTACTGAGATCCAATCTGAAGATGGTGATGATGCTGAGCAAAGATCCAAAGTTCGACTTATAGTTCCGAACAGCTGTTGTGGTGCCATTATTGGCAAGAGTGGAGCAACCATCAAGTCATTTATTGAAGATTCTCGAGCTGGCATAAAGATATCTCCCCAAGACAACAATTATATTGGCTTGAGTGACCGGGTTGTGACACTGACAGGTTCTTTTGAGGAACAGATGCGTGCTATTGATCTGATTTTGTCAAAGCTAACTGAAGACCCCCTTTACTTGCAGTCAATGAATGCCCCACTTTCATATCCAGTTGGAACAACAGCATACAACACAAACTATGGACCAAATGGGGTTGGAGGAAGATATCCGAATAATAAGGAAGATCGTAATAACTCTTTGACAATTGGTGTTGCTGATGAACATATTGGTGTGGTGGTTGGACGTGGTGGAAGGAACATACTGGAGATTAGTCAGGTTAGTGGAGCAAGGATAAAGATATCAGACAGGGGTGATTTCATGTCTGGTACATCAAACAGGAAAGTCACGATTACAGGGTCTCTTAGAGCAATACGAGCAGCTGAGGCCATGATTAATCAGAAGGTTGCCTCTGTTACGGAGAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11620.p1 GENE.S_Transcript_11620~~S_Transcript_11620.p1 ORF type:complete len:283 (+),score=66.00,KH_1|PF00013.25|7.2e-14,KH_1|PF00013.25|3.7e-14,KH_1|PF00013.25|2.4e-13,KH_3|PF13014.2|4.6e-11,KH_3|PF13014.2|7.2e+03,KH_3|PF13014.2|9.3e-08,KH_3|PF13014.2|2.4e-09,KH_2|PF07650.13|0.002,KH_2|PF07650.13|0.039,KH_2|PF07650.13|0.0016,KH_4|PF13083.2|1.6,KH_4|PF13083.2|0.0082,KH_4|PF13083.2|0.017 S_Transcript_11620:173-1021(+)
MEKPTYVKFLVSNASAGSVIGKGGSTITDFQKDSGARIQLSRNHEFFPGTADRIIMVSGKIEDVLKAVDLILNKLLTEIQSEDGDDAEQRSKVRLIVPNSCCGAIIGKSGATIKSFIEDSRAGIKISPQDNNYIGLSDRVVTLTGSFEEQMRAIDLILSKLTEDPLYLQSMNAPLSYPVGTTAYNTNYGPNGVGGRYPNNKEDRNNSLTIGVADEHIGVVVGRGGRNILEISQVSGARIKISDRGDFMSGTSNRKVTITGSLRAIRAAEAMINQKVASVTES*

Click here to download the sequence:
Link to NCBI Protein BLAST