Transcript Information: S_Transcript_11622.p1


Annotated TAIR IDAT5G04430.2
Annotated Gene Namebinding to TOMV RNA 1L (long form)
Annotated Gene Symbol(s)BTR1, BTR1L
Annotation TypeOrtholog
Chromosome Positionchr5:1250602-1253523 | Reverse length=334
E-Value8.6E-107
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 27.521405530971
Replicate 38.2154006190584
Condition 2: 8 Hour
Replicate 16.8822850568929
Replicate 28.236907908263
Replicate 39.398350989469
Condition 3: 24 Hour
Replicate 112.213275769741
Replicate 24.9448316166576
Replicate 35.7322828193446


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11622.p1 GENE.S_Transcript_11622~~S_Transcript_11622.p1 ORF type:3prime_partial len:220 (+),score=51.78,KH_1|PF00013.25|4.5e-14,KH_1|PF00013.25|2.3e-14,KH_3|PF13014.2|3e-11,KH_3|PF13014.2|3.8e+03,KH_3|PF13014.2|6.2e-08,KH_2|PF07650.13|0.0012,KH_2|PF07650.13|0.024,KH_4|PF13083.2|1.2,KH_4|PF13083.2|0.0054 S_Transcript_11622:173-829(+)
ATGGAGAAGCCTACATATGTCAAGTTCCTTGTGTCAAATGCTTCCGCTGGTTCAGTTATTGGCAAAGGTGGCTCCACAATAACAGATTTTCAAAAGGACTCTGGAGCACGGATTCAGTTATCCCGTAATCATGAGTTTTTCCCGGGAACTGCTGATAGAATTATTATGGTATCTGGAAAGATTGAGGATGTACTGAAGGCAGTGGACCTTATCCTTAATAAACTGCTTACTGAGATCCAATCTGAAGATGGTGATGATGCTGAGCAAAGATCCAAAGTTCGACTTATAGTTCCGAACAGCTGTTGTGGTGCCATTATTGGCAAGAGTGGAGCAACCATCAAGTCATTTATTGAAGATTCTCGAGCTGGCATAAAGATATCTCCCCAAGACAACAATTATATTGGCTTGAGTGACCGGGTTGTGACACTGACAGGTTCTTTTGAGGAACAGATGCGTGCTATTGATCTGATTTTGTCAAAGCTAACTGAAGACCCCCTTTACTTGCAGTCAATGAATGCCCCACTTTCATATCCAGGTGTTTTGTTTGCTGGTTTTCACCGTGTGCCATATCCATATGTGCTTCCTCCAGTTGGAACAACAGCATACAACACAAACTATGGACCAAATGGGGTTGGAGGAAGATATCCGAATAATAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11622.p1 GENE.S_Transcript_11622~~S_Transcript_11622.p1 ORF type:3prime_partial len:220 (+),score=51.78,KH_1|PF00013.25|4.5e-14,KH_1|PF00013.25|2.3e-14,KH_3|PF13014.2|3e-11,KH_3|PF13014.2|3.8e+03,KH_3|PF13014.2|6.2e-08,KH_2|PF07650.13|0.0012,KH_2|PF07650.13|0.024,KH_4|PF13083.2|1.2,KH_4|PF13083.2|0.0054 S_Transcript_11622:173-829(+)
MEKPTYVKFLVSNASAGSVIGKGGSTITDFQKDSGARIQLSRNHEFFPGTADRIIMVSGKIEDVLKAVDLILNKLLTEIQSEDGDDAEQRSKVRLIVPNSCCGAIIGKSGATIKSFIEDSRAGIKISPQDNNYIGLSDRVVTLTGSFEEQMRAIDLILSKLTEDPLYLQSMNAPLSYPGVLFAGFHRVPYPYVLPPVGTTAYNTNYGPNGVGGRYPNNK

Click here to download the sequence:
Link to NCBI Protein BLAST