Transcript Information: S_Transcript_116396.p1


Annotated TAIR IDAT2G21960.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9354990-9356958 | Forward length=332
E-Value3E-135
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.94738839348539
Replicate 21.2852110421853
Replicate 30.59685230044015
Condition 2: 8 Hour
Replicate 10.69014208146061
Replicate 20.57920643727447
Replicate 30.96576655815449
Condition 3: 24 Hour
Replicate 11.2018220690618
Replicate 20.95349369091429
Replicate 31.3059958268021


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116396.p1 GENE.S_Transcript_116396~~S_Transcript_116396.p1 ORF type:complete len:309 (+),score=89.38 S_Transcript_116396:158-1084(+)
ATGTCAGTTGTTGCAGTCATTGGTGTTGGGCTTGCTTCTCTCCGCCCACCTCATTGCAGAAATCTCCTCTTTCATGATCATCATGATATCAATTACCCATCATTATTCAATAATGGGTCTGTTAAGAAACGGTTGAATTTTATCAGGTCATCATCTTCATCTTCTTCTTCTGTTGCTGTTCCTGCTGTTGATTTCAGCCCTCTTGAATCTGCCCTTGAAAAGAAGGACAGTGATGCTGTCAAGGAGGCACTTGATCAATTAAGTGAAGTTGGTTGGGCCAAAAAATGGAGTTCCCAGCCAAATGTTTCCCGTCGAACGACAACTCTTCGAGAGCTCACAACTCTTGGAATAAAGAATGCTGAGACGCTTGCTATCCCAAGTGTGAGAAATGATGTAGCTTTCCTATTTACGGTGGTTGGCACAACAGGATTCTTAGCTCTTCTTGCTGGTCAACTTCCAGGGGACTGGGGCTTCTTTGTGCCATACTTGATTGGAAGCATCTCTTTAGTGGTCTTGGCCGTGGGAAGCACTGCTCCAGGACTACTGCAGGCAGCCATCGGTGGGTTCTCATCAGTTTTTCCTGATTATCAAGAAAGGATTGCGCGACATGAAGCTGCTCACTTTTTAGTTGCGTATTTGCTTGGCTTGCCGATTTTAAATTATTCCCTTGATATTGGGAAAGAGCATGTAAACCTCATCAATGACAAGTTGGAGAAGCTTATATACAGCGGGCAGCTTGATGCCAAAGAGCTTGACAGGTTGGCTGTTGTGTCAATGGCTGGGTTGGCTGCTGAAGGGCTGACATATGACAAGGTGGTTGGTCAATCTGCTGATCTTTTCTCCCTTCAGGACAAGTTGTTTGAAAGTACAAGTTTTATGATAGCTGCTCTTGACTTTTGCCCTTCAGAGATTTATAAACAGGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116396.p1 GENE.S_Transcript_116396~~S_Transcript_116396.p1 ORF type:complete len:309 (+),score=89.38 S_Transcript_116396:158-1084(+)
MSVVAVIGVGLASLRPPHCRNLLFHDHHDINYPSLFNNGSVKKRLNFIRSSSSSSSSVAVPAVDFSPLESALEKKDSDAVKEALDQLSEVGWAKKWSSQPNVSRRTTTLRELTTLGIKNAETLAIPSVRNDVAFLFTVVGTTGFLALLAGQLPGDWGFFVPYLIGSISLVVLAVGSTAPGLLQAAIGGFSSVFPDYQERIARHEAAHFLVAYLLGLPILNYSLDIGKEHVNLINDKLEKLIYSGQLDAKELDRLAVVSMAGLAAEGLTYDKVVGQSADLFSLQDKLFESTSFMIAALDFCPSEIYKQE*

Click here to download the sequence:
Link to NCBI Protein BLAST