Transcript Information: S_Transcript_116398.p1


Annotated TAIR IDAT2G21960.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:9354990-9356958 | Forward length=332
E-Value8.1E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.28013685510716
Replicate 20
Replicate 30.9706703201895
Condition 2: 8 Hour
Replicate 10.89791117124771
Replicate 20.94197257430428
Replicate 30
Condition 3: 24 Hour
Replicate 10.68983842601876
Replicate 20.71569931293729
Replicate 30.26549520426438


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116398.p1 GENE.S_Transcript_116398~~S_Transcript_116398.p1 ORF type:5prime_partial len:95 (+),score=21.98 S_Transcript_116398:1-285(+)
AAGGACAGTGATGCTGTCAAGGAGGCACTTGATCAATTAAGTGAAGTTGGTTGGGCCAAAAAATGGAGTTCCCAGCCAAATGTTTCCCGTCGAACGACAACTCTTCGAGAGCTCACAACTCTTGGAATAAAGAATGCTGAGACGCTTGCTATCCCAAGTGTGAGAAATGATGTAGCTTTCCTATTTACGGTGGTTGGCACAACAGGATTCTTAGCTCTTCTTGCTGGTCAACTTCCAGGGCCTACTGCAGGCAGCCATTGGTGGGTTCTCATCAGTTTTTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116398.p1 GENE.S_Transcript_116398~~S_Transcript_116398.p1 ORF type:5prime_partial len:95 (+),score=21.98 S_Transcript_116398:1-285(+)
KDSDAVKEALDQLSEVGWAKKWSSQPNVSRRTTTLRELTTLGIKNAETLAIPSVRNDVAFLFTVVGTTGFLALLAGQLPGPTAGSHWWVLISFS*

Click here to download the sequence:
Link to NCBI Protein BLAST