Transcript Information: S_Transcript_116760.p1


Annotated TAIR IDAT3G08940.2
Annotated Gene Namelight harvesting complex photosystem II
Annotated Gene Symbol(s)LHCB4.2
Annotation TypeOrtholog
Chromosome Positionchr3:2717717-2718665 | Forward length=287
E-Value6.5E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11573.7709167929
Replicate 21736.4487878479
Replicate 32251.0383986484
Condition 2: 8 Hour
Replicate 11365.3433057556
Replicate 21268.9809700645
Replicate 31217.4457543553
Condition 3: 24 Hour
Replicate 12266.7100633087
Replicate 21977.8897227775
Replicate 31942.8856080816


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116760.p1 GENE.S_Transcript_116760~~S_Transcript_116760.p1 ORF type:complete len:288 (+),score=52.87,Chloroa_b-bind|PF00504.17|8e-50 S_Transcript_116760:631-1494(+)
ATGGCCTCGGCCACCGCCACTGCTGCCACATCATCATTTATCGGTACCCGCCTCACAGATGTACCATCCAACTCGGACCGGGTGATGGCCCGGTTTGGGTTTGGAACCAAGAAGGTAGCCCCTAAGAAGGCACCATCTAAGTCCAGCTCGGGCTCGGATCGGCCTTTGTGGTACCCTGGGGCCAAGGCCCCAAAGTGGTTAGATGGGAGCCTAGTGGGTGACTATGGGTTTGATCCATTTGGGCTTGGCAAGCCTGCTGAGTATTTACAATACGACTATGACTCATTGGACCAGAACTTGGCCAAGAACGTGGCTGGTGATGTTATTGGGACCCGGATCGAGAGCTCGGATGTCAAGTCCACAGCCCTTCAGCCCTACAGTGAAGTGTTTGGGCTTCAGAGGTTTAGAGAGTGTGAGCTGATCCATGGTAGATGGGCTATGTTGGCCACTCTTGGTGCCTTGACTGTTGAGTGGCTTACTGGTGTTACATGGCAAGATGCTGGCAAGGTGGAGCTAATTGAGGGATCATCATACCTCGGGCAACCACTACCCTTCTCAATAACTACATTGATCTGGATAGAGGTTTTGGTCATTGGGTACATTGAATTCCAGAGGAACAATGAGCTTGACCCGGAAAAGAGGTTATACCCAGGTGGCAGCTTTTTCGACCCGCTAGGGCTGGCAGCCGACCCTGAGAAGAAGGCCAGGCTTCAACTTGCAGAGATCAAGCATGCCAGGCTTGCTATGGTTGCCTTCCTTGGTTTTGCTGTTCAAGCTGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCAACCCATTTGAGTGACCCGCTCCACACTACTATTCTGGACACAATCCTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116760.p1 GENE.S_Transcript_116760~~S_Transcript_116760.p1 ORF type:complete len:288 (+),score=52.87,Chloroa_b-bind|PF00504.17|8e-50 S_Transcript_116760:631-1494(+)
MASATATAATSSFIGTRLTDVPSNSDRVMARFGFGTKKVAPKKAPSKSSSGSDRPLWYPGAKAPKWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNVAGDVIGTRIESSDVKSTALQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELIEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNNELDPEKRLYPGGSFFDPLGLAADPEKKARLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTILDTIL*

Click here to download the sequence:
Link to NCBI Protein BLAST