Transcript Information: S_Transcript_116821.p1


Annotated TAIR IDAT5G06980.4
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12320.1).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2167799-2169110 | Forward length=279
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 150.595647697116
Replicate 240.918778307251
Replicate 355.542658670379
Condition 2: 8 Hour
Replicate 11.1158634468267
Replicate 22.0811021990443
Replicate 31.1153641188653
Condition 3: 24 Hour
Replicate 153.088147087607
Replicate 246.908819309184
Replicate 349.270970465808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116821.p1 GENE.S_Transcript_116821~~S_Transcript_116821.p1 ORF type:3prime_partial len:172 (-),score=35.59 S_Transcript_116821:3-515(-)
ATGATGAAAATGCATATCCTTTCATTTAGCTTCTTTGCTTATGAACTTATATTCCACTGTATTAATTCACATCTCTTTTTTGAGGCATTGGGAATGATGGGCATGTTTCTCACTGATCAAGAGCCTGGGCATGAGGATTCCTCTGCAGAAGAATCCGTGTTGCTGGGACTTGAGGCTGTCCTGAGCCAGATGAGCAACAAAACTCGACTATGCTTTCGAGATTCCTTGTACCGCCTTGCTCAACACTCACAGCCAGAGATATCAACAGAAGTTCAAATGGAAGACCGTCCATTGGACAAGCAAAACAGTGATGTGAAAACAAGATCAACAAGAACAGTGACAGCAGAATCACAAACCAATACCATTGACAGAGCTGTGGCTAATCTTATGTTCCATATGGTGGATGGAGAGGCGCATGACTATGTTCCTTCTAAGTTGGATGAATACAAGCAGATGGGTGAAGCCTCCGAACCAATGCCGGGTATGCGAGCCTGCAATTATGACTTGGCACCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116821.p1 GENE.S_Transcript_116821~~S_Transcript_116821.p1 ORF type:3prime_partial len:172 (-),score=35.59 S_Transcript_116821:3-515(-)
MMKMHILSFSFFAYELIFHCINSHLFFEALGMMGMFLTDQEPGHEDSSAEESVLLGLEAVLSQMSNKTRLCFRDSLYRLAQHSQPEISTEVQMEDRPLDKQNSDVKTRSTRTVTAESQTNTIDRAVANLMFHMVDGEAHDYVPSKLDEYKQMGEASEPMPGMRACNYDLAP

Click here to download the sequence:
Link to NCBI Protein BLAST