Transcript Information: S_Transcript_116883.p1


Annotated TAIR IDAT3G23910.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8636594-8639344 | Reverse length=421
E-Value9E-58
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4902296701876
Replicate 21.8988466422451
Replicate 32.7210594221706
Condition 2: 8 Hour
Replicate 11.0487896877278
Replicate 20.45843952130587
Replicate 30.78624028051161
Condition 3: 24 Hour
Replicate 10.98481032129728
Replicate 24.3655702626571
Replicate 32.2741187578383


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116883.p1 GENE.S_Transcript_116883~~S_Transcript_116883.p1 ORF type:complete len:244 (+),score=59.28 S_Transcript_116883:860-1591(+)
ATGGACTTGAAAAATAAAATTGAGAACAACAATATGACATTAAAGAAATTGCAAGATCTTGAACTCAACTTGAAAAGGGTCGAGCTTGTTGAAAAGATTGAGGAAGCATTGACTGGCTTGAAGGTGATTGATTTTGAAGATAACTGCATAAGATTGTCACTGAGGACATACATCCCAAATGCTGAAGGCTGGGTGTGCCAGCTAAAGGCTGAAAACAATATAAACTTATCTGAAGTGAACCATGAGTTGCTAATAGAGGTGAAGGATGGTACAATGGAGCTAAAAAATGCAGAGATTTTTCCAAATGATGTTTACCTAGGAGACATTGTTGAAGCTGCAAACAATTTCAGCAAGTTATTTTCTACCCTTTTGGTGCCGGAGACAAGGTCCTCTTTGGGATGGTTTCTGCACAAAGTACAAGATAAAATTGTTACCTGCACTGTAAGACAGCTTATTGTGAAGAATGCTAATGAATCTACAAGGCACTCCATTGAGTACTTGGATAAGGACGAGTTGGTTGTAGCTCACATGGTTGGTGGGATTGATGCCTTTATAAAGCCATCCCAAGGTTGGCCATTATCCACTTCTACATTGAAGCTAGTATCTCTGAGGTGTTCTGATCAGAACACAAAGGAAATTTCTTTGAGTTTGCTTTGCAAAGTTGAGGCAAGTAATTTCCTTCCCCCCCTCCCAATACATAGTCGAATATTTGCTGCTGCTTCCACCTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116883.p1 GENE.S_Transcript_116883~~S_Transcript_116883.p1 ORF type:complete len:244 (+),score=59.28 S_Transcript_116883:860-1591(+)
MDLKNKIENNNMTLKKLQDLELNLKRVELVEKIEEALTGLKVIDFEDNCIRLSLRTYIPNAEGWVCQLKAENNINLSEVNHELLIEVKDGTMELKNAEIFPNDVYLGDIVEAANNFSKLFSTLLVPETRSSLGWFLHKVQDKIVTCTVRQLIVKNANESTRHSIEYLDKDELVVAHMVGGIDAFIKPSQGWPLSTSTLKLVSLRCSDQNTKEISLSLLCKVEASNFLPPLPIHSRIFAAASTS*

Click here to download the sequence:
Link to NCBI Protein BLAST