Transcript Information: S_Transcript_116883.p2


Annotated TAIR IDAT3G23910.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8636594-8639344 | Reverse length=421
E-Value4E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.5597372393855
Replicate 211.353950181645
Replicate 313.91294125605
Condition 2: 8 Hour
Replicate 12.3694878130148
Replicate 22.8782495325964
Replicate 34.3628927846453
Condition 3: 24 Hour
Replicate 115.074247087077
Replicate 210.735489694059
Replicate 311.50479218479


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116883.p2 GENE.S_Transcript_116883~~S_Transcript_116883.p2 ORF type:5prime_partial len:171 (+),score=32.95 S_Transcript_116883:1-513(+)
TACTCCACCACCAACTTCTTCTGTTCCTCAGAGCCGCAGAAATTTGAAATAGAATGCAGAGACTGGAGAGAAGCCGGGAGGAAGAGCACAGAACAGAAAATGGACTCACACTCACAACCTCTCAATCTCGATTCTATTCGCAGTCAAATTGAAGAACTAACCACCTTCCTCAAAGAAGATCCCAGCAAAAACTCCTCACTTTCTCCTTCTGAATCCCAGCAACTGCTTCAAGAATGCCTTCAAGCTTTTCAGACCAAAGTGAAACAAATTGAGTCAGACCATTCTGATATTGGCCATTTCAATGATGAAGATCTGGATGCATACACGGATCGATTGAGACTTGAGCTTAAATTGGTAGAGGCTGATAATGCTTCAGTCTCTAAGGAAATTGAGGATCTAACACAATCGTATGTGGAAGGTACTTGTGAATTGGAGTTTAATCTTGTATCCTTGCGCCATATTGTGGATTCTATTGAATCAAAGGTTCGTTGTCTACATTCATTAGATATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116883.p2 GENE.S_Transcript_116883~~S_Transcript_116883.p2 ORF type:5prime_partial len:171 (+),score=32.95 S_Transcript_116883:1-513(+)
YSTTNFFCSSEPQKFEIECRDWREAGRKSTEQKMDSHSQPLNLDSIRSQIEELTTFLKEDPSKNSSLSPSESQQLLQECLQAFQTKVKQIESDHSDIGHFNDEDLDAYTDRLRLELKLVEADNASVSKEIEDLTQSYVEGTCELEFNLVSLRHIVDSIESKVRCLHSLDM*

Click here to download the sequence:
Link to NCBI Protein BLAST