Transcript Information: S_Transcript_116886.p1


Annotated TAIR IDAT3G23910.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:8636594-8639344 | Reverse length=421
E-Value9.3E-108
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.613001235181
Replicate 234.848632743351
Replicate 329.894108161653
Condition 2: 8 Hour
Replicate 110.453622704477
Replicate 211.210294525353
Replicate 39.102192005613
Condition 3: 24 Hour
Replicate 133.409821809144
Replicate 231.205945351311
Replicate 335.387792150098


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116886.p1 GENE.S_Transcript_116886~~S_Transcript_116886.p1 ORF type:complete len:459 (+),score=103.38 S_Transcript_116886:100-1377(+)
ATGGACTCACACTCACAACCTCTCAATCTCGATTCTATTCGCAGTCAAATTGAAGAACTAACCACCTTCCTCAAAGAAGATCCCAGCAAAAACTCCTCACTTTCTCCTTCTGAATCCCAGCAACTGCTTCAAGAATGCCTTCAAGCTTTTCAGACCAAAGTGAAACAAATTGAGTCAGACCATTCTGATATTGGCCATTTCAATGATGAAGATCTGGATGCATACACGGATCGATTGAGACTTGAGCTTAAATTGGTAGAGGCTGATAATGCTTCAGTCTCTAAGGAAATTGAGGATCTAACACAATCGTATGTGGAAGGTACTTGTGAATTGGAGTTTAATCTTGTATCCTTGCGCCATATTGTGGATTCTATTGAATCAAAGGGACTGGGGCAAGCAGAATCGAGAGATCATGTTCACAACTTTCATCAAGGAGAAGATCATACAAAATTGTTGAAGGCAGATAATGACCGCTTTGAGGTAATGGACTTGAAAAATAAAATTGAGAACAACAATATGACATTAAAGAAATTGCAAGATCTTGAACTCAACTTGAAAAGGGTCGAGCTTGTTGAAAAGATTGAGGAAGCATTGACTGGCTTGAAGGTGATTGATTTTGAAGATAACTGCATAAGATTGTCACTGAGGACATACATCCCAAATGCTGAAGGCTGGGTGTGCCAGCTAAAGGCTGAAAACAATATAAACTTATCTGAAGTGAACCATGAGTTGCTAATAGAGGTGAAGGATGGTACAATGGAGCTAAAAAATGCAGAGATTTTTCCAAATGATGTTTACCTAGGAGACATTGTTGAAGCTGCAAACAATTTCAGCAAGTTATTTTCTACCCTTTTGGTGCCGGAGACAAGGTCCTCTTTGGGATGGTTTCTGCACAAAGTACAAGATAAAATTGTTACCTGCACTGTAAGACAGCTTATTGTGAAGAATGCTAATGAATCTACAAGGCACTCCATTGAGTACTTGGATAAGGACGAGTTGGTTGTAGCTCACATGGTTGGTGGGATTGATGCCTTTATAAAGCCATCCCAAGGTTGGCCATTATCCACTTCTACATTGAAGCTAGTATCTCTGAGGTGTTCTGATCAGAACACAAAGGAAATTTCTTTGAGTTTGCTTTGCAAAGTTGAGGAGGTGGCAAATTCTTTAGATGATGACGTACGCAGAAGCATAACAGACTTTTTGGATGGCATTGAAGCAATACTTTTGGAGAAAATGCATACAGAACTACATTCTGATAGTATTACACAACGAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116886.p1 GENE.S_Transcript_116886~~S_Transcript_116886.p1 ORF type:complete len:459 (+),score=103.38 S_Transcript_116886:100-1377(+)
MDSHSQPLNLDSIRSQIEELTTFLKEDPSKNSSLSPSESQQLLQECLQAFQTKVKQIESDHSDIGHFNDEDLDAYTDRLRLELKLVEADNASVSKEIEDLTQSYVEGTCELEFNLVSLRHIVDSIESKGLGQAESRDHVHNFHQGEDHTKLLKADNDRFEVMDLKNKIENNNMTLKKLQDLELNLKRVELVEKIEEALTGLKVIDFEDNCIRLSLRTYIPNAEGWVCQLKAENNINLSEVNHELLIEVKDGTMELKNAEIFPNDVYLGDIVEAANNFSKLFSTLLVPETRSSLGWFLHKVQDKIVTCTVRQLIVKNANESTRHSIEYLDKDELVVAHMVGGIDAFIKPSQGWPLSTSTLKLVSLRCSDQNTKEISLSLLCKVEEVANSLDDDVRRSITDFLDGIEAILLEKMHTELHSDSITQRV*

Click here to download the sequence:
Link to NCBI Protein BLAST