Transcript Information: S_Transcript_116968.p1


Annotated TAIR IDAT5G50350.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:20498697-20501611 | Reverse length=584
E-Value8E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.16227439777549
Replicate 20
Replicate 30.11245570782683
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.13819397302651
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116968.p1 GENE.S_Transcript_116968~~S_Transcript_116968.p1 ORF type:5prime_partial len:164 (-),score=13.20 S_Transcript_116968:392-883(-)
TGTAGAACAGTTTTTGGAGTTGCAGGACGTTGCTTATTATCACTACCAAGGATAGCGCCATCATTACTAGTCTCCCACTTCAACCAAGGGAGAACAACTCCATCCATCTCGCTAGGGAGCAAATCAGACCTCACTGGACTCCTAAAATTTTCAATCTCTCCATATGGCATCAATGGTTTTATTGTTCCTCCTACAACAGAACTTGTATCGCTCCTTTCACCATCAAATGATGAGATGTCTGTCTCTTCAACACTAGAGATGAAGTCTTCAATAATTTTTTCAGCCTCTTCAACCAATTGCTTTGACGCTTTGTTTCTATCTTTACTTCTCTTTCGGCCTCGTATAAGTCTTCTAGCAGCAGCAGTTTCTTTAGGACTGGAACGCAATTCTCCAACAATCTTTTTGAGTTCATTACCACGCTCCTCCTCCAACAATATTTCAGCAAGCAGTTCTTGCTTACGCTTTTCAGACTGTTCCAATTTTGTCCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116968.p1 GENE.S_Transcript_116968~~S_Transcript_116968.p1 ORF type:5prime_partial len:164 (-),score=13.20 S_Transcript_116968:392-883(-)
CRTVFGVAGRCLLSLPRIAPSLLVSHFNQGRTTPSISLGSKSDLTGLLKFSISPYGINGFIVPPTTELVSLLSPSNDEMSVSSTLEMKSSIIFSASSTNCFDALFLSLLLFRPRISLLAAAVSLGLERNSPTIFLSSLPRSSSNNISASSSCLRFSDCSNFVL*

Click here to download the sequence:
Link to NCBI Protein BLAST