Transcript Information: S_Transcript_116991.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value5E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8277608395482
Replicate 22.081395241275
Replicate 31.8373140853096
Condition 2: 8 Hour
Replicate 12.8809395220882
Replicate 22.7859283211735
Replicate 33.1209618380124
Condition 3: 24 Hour
Replicate 11.5332635204719
Replicate 22.5315049911694
Replicate 32.9695388129797


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116991.p1 GENE.S_Transcript_116991~~S_Transcript_116991.p1 ORF type:complete len:1325 (+),score=232.44,RVT_1|PF00078.23|2.5e-44,zf-RVT|PF13966.2|5.1e-16,RVT_3|PF13456.2|1.4e+03,RVT_3|PF13456.2|3e-10,Exo_endo_phos_2|PF14529.2|1.8e-06,Exo_endo_phos|PF03372.19|1e-05 S_Transcript_116991:1510-5484(+)
ATGCTTATGGAGGATAAGGCAGTTGATAACTTGAGGCATTTGGGCTTTGATAACTTGTTTGCCTCATCTGCGGCTGGTAAGTCTGGTGGTTTGGTAGTCATGTGGAATAACTATTGTGGATCTGAGTTAGTTCTTACAACTGACCAACTTTACCTGATAAGATTCAAAGATGGAGTGAGAGATCTGGTTTGGTATTTGTGCTGTGTCTATAGGGCCCCTAATCATGGGGATAAGGAGGCTTTCTGGGAGGCCTTAGATTCACTTATTTCGTTTATTAATAACCCCATTTGCATTATAGGGGATTTCAATGATATACTTGATAGCGGAGAGAAGTGGGGAGGCAGGCTGGGCTCTAGCTCAAATAGTGGAGGATTGAGAAGAATTGTTAACAAACATGGTCTTTTTGACCTGGGTTATCAAGGAAATCCATTCACTTGGTTCAGAAGGAGAGGTGGTAGGGTCGTCCTTAAAGAGAGGCTGGATAGGGCTATCTGGAACTCTAGTTGGAGAGATCTTTTTCATAATGCAAATGTTACTCACACCCCAGCAATCAAATCTGATCACTCCCCCATTATTTTAAATTGTTTGGGTGTCCAGGATAGGGGTCCGACTCCTTTCAGGTTTGAAGCTATGTGGGTGAGGGAGGATTCTTGTTATCACGCTGTGGAAGAGGCGTGGCAAGAGGATATTCTTGGCTCCTATGGGTTTAGACTGAAGCATAAATTGAAAGTGACCAAAAGGAAACTAAGAGAATGGAATTTGAATACTTTTGGGAATGTTCAACAAAGGATTAGATGTCTAGTACAACAGATCGATGATATTCAGCAGAATAATAATAGTAGTATTTCAAGTTCGGGTTTGGAGGAGAGTCTCATGGCTGAATTGGCGGAATTATACACTAGAGAGGCTATTATGCATAAGCAAAAGTCCAGGATAGCCTATCTAAAGGAGGGAGATCAAAACACCAGGTTTTTTCATCTGTCAACAGTCAACAGAAGAAGAAGAAACGCAGTAGAGGCCTTAAAACTGACAAATGGAATTTGGGTGGACTCTGAACAGGATATTGCCATAGCTTTCTCTGATTATTTTAAAGAATTATTTTCTTCTTCTAATCCACCTGAAGCTGATCTTACAGGCCTTTATGAACCTATTATTAGCGAACAGGATAATATATCTTTGTGTGTTGCCCCTGATGCAGAGGAGATTATGCAGACTGTGAATTCAATGGGAGCTACCAAGTCCCCTGGACCTGATGGCTTTCCTGCTCTCTTTTACCAGCAGTATTGGCCAATTGTGAAAGACGATTTGGTAAAGATGGTGCAGGCTTTCTTCCATTCTGGTTTTCTGTTAAGAGAGTTAAACCACACTTTTATAACCCTTGTACCTAAGTCTGATCAGGCGATGAAGGTAACTGATTTTCGCCCTATATCCTTGTGTAATGTTGCCTACAAAATTGTTTCTAAAATTCTAGCAAATAGGATGAAAACTTATCTGAATGATTTTATTAGCCCCTTTCAATCTGCCTTTATACCTGGGAGATTTATCACAGATAACTCTATAATGATTAATGAAGTTCTTCACAGTATGGCAAGGAGTTGTTCTAAGGAGGGTTTGATGGCTGTAAAGGTCGATATGGCTAAAGCATATGACAGAATTGAATGGAGTTTTCTGTTGAATGTGATGAAGGCCTTGGGGTTTTCTGATAGGTTTGTGCATTTGGTGAACCAGTGTATATCTACTTCCTCTTATTCTATTTTACTCAATGGCAGACCACACGGGCACTATAGACCTGAGAGAGGACTAAGACAGGGGGACTCTTTGTCTCCATTCTTATTTGTCATTGCTATTGACGCTTTTTCCAGGTTGATCATAAAGAAGCAAGAGGAGGGACTTATCCAAGGAATCAAAATTGCAAGAGACTGTCCTCCTATTACTCATCTTTTATATGCTGATGACCTGGTCATCTTTTGTAGAGCCAATGAGCAGAATGCAAAGGAGGTGAAAGATGCTCTGGATATTCTGCAAGAATGGAGTGGTCTGATGGCTAACAACTTGAAGTCAGGGATTTATTTTAGCAAAAAGACTAAAAGGGAGAATATGGTGGCTGTTAAACGGGTGTTACAATTTAGGGAAATGGAAAAGGAGGCTGTGTACCTAGGGCTCCCATTTTTCAGAAAGCAAAGCAAATACAAGAGGTTTGTATATTTGAAAGACAGACTACAAGCTAATTTGCAAGGATGGAAGGCCAAAAATCTTTCTTATGCAGCTAGAGCTACTCTCATACAGTCTGTGGGATCTACCATTCCGGTGTACTCTATGGCCAGTAATATGATCACTAAGAAAATGTGTAAGGAGTTGGATAGTCTTATGAGAGACTTTTGGTGGGGATTTAAAGAAGATAAGAAGGGATTATACTTCAAGGCGTGGAAACAAATTTGCAGACCAGTGGAGGAAGGAGGGTTAAACCTCAGATTAATGCATGACTATAACAGGGCTATACAAGCTAAGCTGTTCTGGCAATTGGCGAGTAAGGAAGATAAACTTTGGGTGAAACAATGCTGGACTAAATATTGCAGAAGACATAACCCTTTCTTTGTGGAAATTGAAGAGCAGGATTCTCCACAATGGAAGGAGATCTTGCAAGGCAAAGCATTGATCCAGAAGGGATTCTGCATCATGGTGGGAGATGGGAGGTCAGTCAATATTTGGACCGACCCGTGGGTTCCTTACATCCAGGGGTTTAAACCCATCCCAAGAGAAGATTCAGAAATTGAGGTTTTTACAGTGGATGAACTGATTGAAAACGGTGTATGGAAGAAGGACCTTATAATGGAGGTATTTGAGAACAACTCAGCAGAAGCAATACTCAATATAAGTTTGCCACAATTAGAAATTTCGGATACCGTAATCTGGACAAAGGAAAGGCATGGTAGTTTCACAGTGAGGAGTGGATATAAGGAGGTATTGAAGGAAAAGAACTTGGAGCCCTCGGTCTTGGAATCAAAACTGTGGAAATTGATTTGGAAAATAAAAGTTCCTCAAAGGATGAAAATGATGTTTTGGAGGGCAGTGGCTGGGTGCATACCCCTTAAAGCCGAAATTAAACTCAAAATACAAGAGGCTGAGGACCTTTGCACCTTTTGTAAAGAGATCTCTGAAGATTTTGTGCATCTATTTTTCAATTGCCAGTATTCAAGAATGGTGTGGTTCAATTGCTTGGGTATTAGAGTTGATGGGATGGCTCAGTGGGACAAGGTACAGTGGGTGAAAGCTATTCTACAACCAGAAAAACACTTGCATATTCCTAAGGGTATAGGTGAAGACTTTGTTGCAAAAGCCGTCATCTTGATGGAATGTATTTGGAGAGAAAGAAATGTATGCTATCATGAGAACAGAGGACCTGATCCCAATCTTATTTGCCAACAATTTAATAGAGGATGGATGGAAATCAGTCCTTTGAGGAGAGAGACCAAGAGCCAAAAGATACTAAATTCTACCCAATTCTCCCCCGAGGGTATGAATATTTATTGTGTGGATGCTGCAGTTAGGGACAATGGATCTACTGGTGCTTGGGTAAAGATGGATCAGGAGATGAATCCTAGGGAGGCTGGGGCTTTAAAGGTTAGAGCTACCAAGGCTGAGCAAGTTGAAGCTGAAGCTATCAGGGGTGTTCTAAGGCACATTAAGGGCATTGGCAAGGAGAATTGCAGGGTTTACTGTGATGCAAAGGTGGTGGTGGAACAAGTCAATGGAAGGCAAAAGCTCAATTGGGAAATCAAGTCTGTTATTATGGAAATTGCAAACCTGTGTAGGGAGATTAATGGTATGGTTATGTATATACCTAGAGATTGTAATTGGTCTGCCCACAACATGGCAGCATGGGCCAGTTTGAGGAGGTTTGAAGGCATTTTACGTAGCTCGGAACTCCCTCTAACAGTCCAATGCAGAAATGTATTTTGTCCACAATACAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116991.p1 GENE.S_Transcript_116991~~S_Transcript_116991.p1 ORF type:complete len:1325 (+),score=232.44,RVT_1|PF00078.23|2.5e-44,zf-RVT|PF13966.2|5.1e-16,RVT_3|PF13456.2|1.4e+03,RVT_3|PF13456.2|3e-10,Exo_endo_phos_2|PF14529.2|1.8e-06,Exo_endo_phos|PF03372.19|1e-05 S_Transcript_116991:1510-5484(+)
MLMEDKAVDNLRHLGFDNLFASSAAGKSGGLVVMWNNYCGSELVLTTDQLYLIRFKDGVRDLVWYLCCVYRAPNHGDKEAFWEALDSLISFINNPICIIGDFNDILDSGEKWGGRLGSSSNSGGLRRIVNKHGLFDLGYQGNPFTWFRRRGGRVVLKERLDRAIWNSSWRDLFHNANVTHTPAIKSDHSPIILNCLGVQDRGPTPFRFEAMWVREDSCYHAVEEAWQEDILGSYGFRLKHKLKVTKRKLREWNLNTFGNVQQRIRCLVQQIDDIQQNNNSSISSSGLEESLMAELAELYTREAIMHKQKSRIAYLKEGDQNTRFFHLSTVNRRRRNAVEALKLTNGIWVDSEQDIAIAFSDYFKELFSSSNPPEADLTGLYEPIISEQDNISLCVAPDAEEIMQTVNSMGATKSPGPDGFPALFYQQYWPIVKDDLVKMVQAFFHSGFLLRELNHTFITLVPKSDQAMKVTDFRPISLCNVAYKIVSKILANRMKTYLNDFISPFQSAFIPGRFITDNSIMINEVLHSMARSCSKEGLMAVKVDMAKAYDRIEWSFLLNVMKALGFSDRFVHLVNQCISTSSYSILLNGRPHGHYRPERGLRQGDSLSPFLFVIAIDAFSRLIIKKQEEGLIQGIKIARDCPPITHLLYADDLVIFCRANEQNAKEVKDALDILQEWSGLMANNLKSGIYFSKKTKRENMVAVKRVLQFREMEKEAVYLGLPFFRKQSKYKRFVYLKDRLQANLQGWKAKNLSYAARATLIQSVGSTIPVYSMASNMITKKMCKELDSLMRDFWWGFKEDKKGLYFKAWKQICRPVEEGGLNLRLMHDYNRAIQAKLFWQLASKEDKLWVKQCWTKYCRRHNPFFVEIEEQDSPQWKEILQGKALIQKGFCIMVGDGRSVNIWTDPWVPYIQGFKPIPREDSEIEVFTVDELIENGVWKKDLIMEVFENNSAEAILNISLPQLEISDTVIWTKERHGSFTVRSGYKEVLKEKNLEPSVLESKLWKLIWKIKVPQRMKMMFWRAVAGCIPLKAEIKLKIQEAEDLCTFCKEISEDFVHLFFNCQYSRMVWFNCLGIRVDGMAQWDKVQWVKAILQPEKHLHIPKGIGEDFVAKAVILMECIWRERNVCYHENRGPDPNLICQQFNRGWMEISPLRRETKSQKILNSTQFSPEGMNIYCVDAAVRDNGSTGAWVKMDQEMNPREAGALKVRATKAEQVEAEAIRGVLRHIKGIGKENCRVYCDAKVVVEQVNGRQKLNWEIKSVIMEIANLCREINGMVMYIPRDCNWSAHNMAAWASLRRFEGILRSSELPLTVQCRNVFCPQYN*

Click here to download the sequence:
Link to NCBI Protein BLAST