Transcript Information: S_Transcript_116995.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value3E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.422108080758
Replicate 21.2918510533103
Replicate 31.4821946335844
Condition 2: 8 Hour
Replicate 12.4238962587786
Replicate 22.0805048677587
Replicate 32.3004473879084
Condition 3: 24 Hour
Replicate 12.1569000920679
Replicate 21.4311247264054
Replicate 31.04247255865


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_116995.p1 GENE.S_Transcript_116995~~S_Transcript_116995.p1 ORF type:complete len:871 (+),score=163.30,RVT_1|PF00078.23|8.6e-24,zf-RVT|PF13966.2|3e-16,RVT_3|PF13456.2|8.6e+02,RVT_3|PF13456.2|1.8e-10 S_Transcript_116995:3267-5879(+)
ATGCAGACTGTGAATTCAATGGGAGCTACCAAGTCCCCTGGACCTGATGGCTTTCCTGCTCTCTTTTACCAGCAGTATTGGCCAATTGTGAAAGACGATTTGGTAAAGATGGTGCAGGCTTTCTTCCATTCTGGTTTTCTGTTAAGAGAGTTAAACCACACTTTTATAACCCTTGTACCTAAGTCTGATCAGGCGATGAAGGTAACTGATTTTCGCCCTATATCCTTGTGTAATGTTGCCTACAAAATTGTTTCTAAAATTCTAGCAAATAGGATGAAAACTTATCTGAATGATTTTATTAGCCCCTTTCAATCTGCCTTTATACCTGGGAGATTTATCACAGATAACTCTATAATGATTAATGAAGTTCTTCACAGTATGGCAAGGAGTTGTTCTAAGGAGGGTTTGATGGCTGTAAAGGTCGATATGGCTAAAGCATATGACAGAATTGAATGGAGTTTTCTGTTGAATGTGATGAAGGCCTTGGGGTTTTCTGATAGGTTGATCATAAAGAAGCAAGAGGAGGGACTTATCCAAGGAATCAAAATTGCAAGAGACTGTCCTCCTATTACTCATCTTTTATATGCTGATGACCTGGTCATCTTTTGTAGAGCCAATGAGCAGAATGCAAAGGAGGTGAAAGATGCTCTGGATATTCTGCAAGAATGGAGTGGTCTGATGGCTAACAACTTGAAGTCAGGGATTTATTTTAGCAAAAAGACTAAAAGGGAGAATATGGTGGCTGTTAAACGGGTGTTACAATTTAGGGAAATGGAAAAGGAGGCTGTGTACCTAGGGCTCCCATTTTTCAGAAAGCAAAGCAAATACAAGAGGTTTGTATATTTGAAAGACAGACTACAAGCTAATTTGCAAGGATGGAAGGCCAAAAATCTTTCTTATGCAGCTAGAGCTACTCTCATACAGTCTGTGGGATCTACCATTCCGGTGTACTCTATGGCCAGTAATATGATCACTAAGAAAATGTGTAAGGAGTTGGATAGTCTTATGAGAGACTTTTGGTGGGGATTTAAAGAAGATAAGAAGGGATTATACTTCAAGGCGTGGAAACAAATTTGCAGACCAGTGGAGGAAGGAGGGTTAAACCTCAGATTAATGCATGACTATAACAGGGCTATACAAGCTAAGCTGTTCTGGCAATTGGCGAGTAAGGAAGATAAACTTTGGGTGAAACAATGCTGGACTAAATATTGCAGAAGACATAACCCTTTCTTTGTGGAAATTGAAGAGCAGGATTCTCCACAATGGAAGGAGATCTTGCAAGGCAAAGCATTGATCCAGAAGGGATTCTGCATCATGGTGGGAGATGGGAGGTCAGTCAATATTTGGACCGACCCGTGGGTTCCTTACATCCAGGGGTTTAAACCCATCCCAAGAGAAGATTCAGAAATTGAGGTTTTTACAGTGGATGAACTGATTGAAAACGGTGTATGGAAGAAGGACCTTATAATGGAGGTATTTGAGAACAACTCAGCAGAAGCAATACTCAATATAAGTTTGCCACAATTAGAAATTTCGGATACCGTAATCTGGACAAAGGAAAGGCATGGTAGTTTCACAGTGAGGAGTGGATATAAGGAGGTATTGAAGGAAAAGAACTTGGAGCCCTCGGTCTTGGAATCAAAACTGTGGAAATTGATTTGGAAAATAAAAGTTCCTCAAAGGATGAAAATGATGTTTTGGAGGGCAGTGGCTGGGTGCATACCCCTTAAAGCCGAAATTAAACTCAAAATACAAGAGGCTGAGGACCTTTGCACCTTTTGTAAAGAGATCTCTGAAGATTTTGTGCATCTATTTTTCAATTGCCAGTATTCAAGAATGGTGTGGTTCAATTGCTTGGGTATTAGAGTTGATGGGATGGCTCAGTGGGACAAGGTACAGTGGGTGAAAGCTATTCTACAACCAGAAAAACACTTGCATATTCCTAAGGGTATAGGTGAAGACTTTGTTGCAAAAGCCGTCATCTTGATGGAATGTATTTGGAGAGAAAGAAATGTATGCTATCATGAGAACAGAGGACCTGATCCCAATCTTATTTGCCAACAATTTAATAGAGGATGGATGGAAATCAGTCCTTTGAGGAGAGAGACCAAGAGCCAAAAGATACTAAATTCTACCCAATTCTCCCCCGAGGGTATGAATATTTATTGTGTGGATGCTGCAGTTAGGGACAATGGATCTACTGGTGCTTGGGTAAAGATGGATCAGGAGATGAATCCTAGGGAGGCTGGGGCTTTAAAGGTTAGAGCTACCAAGGCTGAGCAAGTTGAAGCTGAAGCTATCAGGGGTGTTCTAAGGCACATTAAGGGCATTGGCAAGGAGAATTGCAGGGTTTACTGTGATGCAAAGGTGGTGGTGGAACAAGTCAATGGAAGGCAAAAGCTCAATTGGGAAATCAAGTCTGTTATTATGGAAATTGCAAACCTGTGTAGGGAGATTAATGGTATGGTTATGTATATACCTAGAGATTGTAATTGGTCTGCCCACAACATGGCAGCATGGGCCAGTTTGAGGAGGTTTGAAGGCATTTTACGTAGCTCGGAACTCCCTCTAACAGTCCAATGCAGAAATGTATTTTGTCCACAATACAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_116995.p1 GENE.S_Transcript_116995~~S_Transcript_116995.p1 ORF type:complete len:871 (+),score=163.30,RVT_1|PF00078.23|8.6e-24,zf-RVT|PF13966.2|3e-16,RVT_3|PF13456.2|8.6e+02,RVT_3|PF13456.2|1.8e-10 S_Transcript_116995:3267-5879(+)
MQTVNSMGATKSPGPDGFPALFYQQYWPIVKDDLVKMVQAFFHSGFLLRELNHTFITLVPKSDQAMKVTDFRPISLCNVAYKIVSKILANRMKTYLNDFISPFQSAFIPGRFITDNSIMINEVLHSMARSCSKEGLMAVKVDMAKAYDRIEWSFLLNVMKALGFSDRLIIKKQEEGLIQGIKIARDCPPITHLLYADDLVIFCRANEQNAKEVKDALDILQEWSGLMANNLKSGIYFSKKTKRENMVAVKRVLQFREMEKEAVYLGLPFFRKQSKYKRFVYLKDRLQANLQGWKAKNLSYAARATLIQSVGSTIPVYSMASNMITKKMCKELDSLMRDFWWGFKEDKKGLYFKAWKQICRPVEEGGLNLRLMHDYNRAIQAKLFWQLASKEDKLWVKQCWTKYCRRHNPFFVEIEEQDSPQWKEILQGKALIQKGFCIMVGDGRSVNIWTDPWVPYIQGFKPIPREDSEIEVFTVDELIENGVWKKDLIMEVFENNSAEAILNISLPQLEISDTVIWTKERHGSFTVRSGYKEVLKEKNLEPSVLESKLWKLIWKIKVPQRMKMMFWRAVAGCIPLKAEIKLKIQEAEDLCTFCKEISEDFVHLFFNCQYSRMVWFNCLGIRVDGMAQWDKVQWVKAILQPEKHLHIPKGIGEDFVAKAVILMECIWRERNVCYHENRGPDPNLICQQFNRGWMEISPLRRETKSQKILNSTQFSPEGMNIYCVDAAVRDNGSTGAWVKMDQEMNPREAGALKVRATKAEQVEAEAIRGVLRHIKGIGKENCRVYCDAKVVVEQVNGRQKLNWEIKSVIMEIANLCREINGMVMYIPRDCNWSAHNMAAWASLRRFEGILRSSELPLTVQCRNVFCPQYN*

Click here to download the sequence:
Link to NCBI Protein BLAST