Transcript Information: S_Transcript_117443.p1


Annotated TAIR IDAT5G16630.1
Annotated Gene NameDNA repair protein Rad4 family
Annotated Gene Symbol(s)ATRAD4, RAD4
Annotation TypeOrtholog
Chromosome Positionchr5:5455325-5459461 | Forward length=865
E-Value3.5E-269
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2912908338182
Replicate 25.6065441699097
Replicate 35.5762154982181
Condition 2: 8 Hour
Replicate 16.5983266510659
Replicate 26.5273158384144
Replicate 35.7176626516891
Condition 3: 24 Hour
Replicate 13.7521799877962
Replicate 24.3994457765851
Replicate 35.5191767757078


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117443.p1 GENE.S_Transcript_117443~~S_Transcript_117443.p1 ORF type:complete len:850 (+),score=200.75,Rad4|PF03835.11|1.5e+04,Rad4|PF03835.11|9.5e-25,BHD_3|PF10405.5|4e-24,BHD_1|PF10403.5|1.2e-12,BHD_2|PF10404.5|1.4e+04,BHD_2|PF10404.5|1.6e+04,BHD_2|PF10404.5|2.9e-12,BHD_2|PF10404.5|1.6e+04,Transglut_core|PF01841.15|1.1e-05,Transglut_core|PF01841.15|7.9e+02 S_Transcript_117443:90-2639(+)
ATGGACTCCAACTCCAAACCCAAAACCCGTTCTTCACAACGCAACACTACCACCCGACCCGAACCCAAACCCAAACCCAAACCCAAATCCAGATTCCAGAGCGTCGATATCATCCGACAAAACCAACCCGAAAAATATCGCCAAAACAACGAACCCGAAATCGACGACGATGAATTTGACTGGCAAGACGGTTCATCCATTCCTTCTTCTTCACTTAACAATGATGATAATGAAGGCCTCACCATTGAATTCGACACTTTGCCTGCGTCTTCTAAGAAGAAAAGTATTATTCGTCGGCCCTCTGCTCAAGATAAGGAAGTAGCGGAGCTAGTGCATAAGGTACATTTGCTTTGTTTGATGGCTAGAGGGAGGTTAATTGATGCTGCTTGTGATGATCCTCTTCTTCAGGCTGCCTTATTCTCTCTGTTACCACCTCACTTGTTGAAGATATCAGAAGCCACAAACCTCACTGCTCAGGCTTTGACTCCTCTTGTCTCTTGGTTCCATAGGAATTTCCAAGTTAGAAGCCCCAGCAGTGTGGAAAAACCATTTCATTTGGCTTTAACATCTGCTCTCGAAACACAGGGAGGAAGCTCTGAAGAGGTTGCAGCGCTGTCTGTGGCACTCTTCAGAGCTCTAAATCTGACAACAAGGTTTGTGTCAATTCTTGATGCATCCCCCTTGAAGCCTGAAATGGAAACAGATGAGCCATCTCATCTGGATTTTGAAAGAGCCAGGAAAGATGTATTTAAATCTTCGACACTTATGGTGAGCCAAATGCACAAAGAACAGGCAGATGCAAACCTTTCCGTGTCTGATGGAGAGCCTATCTGTGAAAATTCTCTCAGGACTGTGTCCGAAAATAAGCACAGACGTATGTCAAAAACTGTTGAAGCTAAAGAGACTTTTGCTGCTGATCACATGAATAAGTCAGATCAGTCTGCTGGCGAGACATCCAATGCTTCTGGGGAAGACAATCATCCAAGGAGAAAAAGTGACTTGGAGTTTGAGATGCAGTTGGAAATGGCTTTGTCAGCCACAGCACTGGCAGCCTCCAAAAGGAAGCCTGCAGCTGATGTGAATGGGTCAAAAAGCAGTCCATCAAATGTATCCTCTCCCTTAAAGAAGTTGAAGAGAGTTGCTGATGTGTCCTCAGCATCCTCCAATGTTATATCTACTGCAATTGGTTCGAAAAAAGTTGGGGCTCCATTGTATTGGGCAGAGGTGTTCTGTAGTGGTGAAAACATGTCAGGGAAGTGGGTCCATGTTGATGCTGTTAATGCAATAGTTGATGGAGAGCTGAAATTAGAGGATGCTGCTGCTGCATGCAAAAAGTCTTTGAGATATGTTGTTGCCTTTGCTGGCCGTGGGGTCAAAGATGTGACACGCAGATACTGCTCCAAGTGGTACAAAGTATCTCCAAAACGAGTTAATTCAGAGTGGTGGGATGCCGTGATAGCTCCATTGAAGGAGTTAGAATCTCGTGCGACAGGGGGTATGGTTCCTTTGAATCATCAGGAAATGAGATCATCCGCTGCTAGCCGGGCCACTCTTGAGGACATGGAGTTGGCAACTAGGGCATTAACTGAGCCCCTCCCTACAAGTCAACAGGCCTATAGGAACCATCCATTGTATGCTATTGAAAAGTGGGTTACCAAGTATCAAATTCTGCATCCAAAGGGTCCCGTCCTTGGCTTCTGTTCTGGTCATGCGGTTTATCCTCGAAATTGTGTACAAACACTCCACACTAAAGAAAGATGGCTCCGGGAGGGGCTGCAAATTAGGGTGAATGAGCTTCCTGCGAAGGAGGTGAAGAGTAGCTTTAAGAATCATAAAGGAAAGACTGTTGAAGTAGAGGATTCTGGTGATGGTGGATCCAATGGTGTTATTTCTCTATTTGGAAAGTGGCAAACTGAACCATTATGTTTGCCCCCTGCTATTAATGGAATTGTTCCCAAGAATGAGCGTGGTCAAGTGGATGCATGGTCTGACAAGTGCCTTCCACCTGGCACTGTACATCTGAGGCTACCTAGGTTGGTTCCTGTTGCAAGGAGATTAGGGATTGATTTTGCTCCTGCTATGGTTGGATTTGAATTTCGAAATAGACGTTCAGTCCCTGTCTATGAAGGCATTGTGGTCTGCACTGAATTCAGAGAAGCAATTCTAGAGGCATATGCAGAAGAAGAACAGAGGAGAGAGGAAGAGGAAAAGAAAAGGGAAGAGAGGCAGGCAATTTCTCGGTGGTACCAACTTCTCTCATCCATGGTTACCCGAAAAAGATTGAATGACTCTTATAGGAGTGAATCAGAAAATGTTCCAAAGCCCTTGAAGTTCAACAACACATCTAAACAAGACGGTACAACTGTGAAGGAGAGTGCTACAACTCACAAAGATAATAAAATAAAGACTAAGATGCGTGATTTGGACAGTATACAATCACAGAATCATGAACATGTCTTTTTGACTGATGATGAAGGCTTCGATGAGGATAGCATGACACAAACTAAAAGATGTCATTGTGGATTATCGATTCAGGTGGAGGAACTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117443.p1 GENE.S_Transcript_117443~~S_Transcript_117443.p1 ORF type:complete len:850 (+),score=200.75,Rad4|PF03835.11|1.5e+04,Rad4|PF03835.11|9.5e-25,BHD_3|PF10405.5|4e-24,BHD_1|PF10403.5|1.2e-12,BHD_2|PF10404.5|1.4e+04,BHD_2|PF10404.5|1.6e+04,BHD_2|PF10404.5|2.9e-12,BHD_2|PF10404.5|1.6e+04,Transglut_core|PF01841.15|1.1e-05,Transglut_core|PF01841.15|7.9e+02 S_Transcript_117443:90-2639(+)
MDSNSKPKTRSSQRNTTTRPEPKPKPKPKSRFQSVDIIRQNQPEKYRQNNEPEIDDDEFDWQDGSSIPSSSLNNDDNEGLTIEFDTLPASSKKKSIIRRPSAQDKEVAELVHKVHLLCLMARGRLIDAACDDPLLQAALFSLLPPHLLKISEATNLTAQALTPLVSWFHRNFQVRSPSSVEKPFHLALTSALETQGGSSEEVAALSVALFRALNLTTRFVSILDASPLKPEMETDEPSHLDFERARKDVFKSSTLMVSQMHKEQADANLSVSDGEPICENSLRTVSENKHRRMSKTVEAKETFAADHMNKSDQSAGETSNASGEDNHPRRKSDLEFEMQLEMALSATALAASKRKPAADVNGSKSSPSNVSSPLKKLKRVADVSSASSNVISTAIGSKKVGAPLYWAEVFCSGENMSGKWVHVDAVNAIVDGELKLEDAAAACKKSLRYVVAFAGRGVKDVTRRYCSKWYKVSPKRVNSEWWDAVIAPLKELESRATGGMVPLNHQEMRSSAASRATLEDMELATRALTEPLPTSQQAYRNHPLYAIEKWVTKYQILHPKGPVLGFCSGHAVYPRNCVQTLHTKERWLREGLQIRVNELPAKEVKSSFKNHKGKTVEVEDSGDGGSNGVISLFGKWQTEPLCLPPAINGIVPKNERGQVDAWSDKCLPPGTVHLRLPRLVPVARRLGIDFAPAMVGFEFRNRRSVPVYEGIVVCTEFREAILEAYAEEEQRREEEEKKREERQAISRWYQLLSSMVTRKRLNDSYRSESENVPKPLKFNNTSKQDGTTVKESATTHKDNKIKTKMRDLDSIQSQNHEHVFLTDDEGFDEDSMTQTKRCHCGLSIQVEEL*

Click here to download the sequence:
Link to NCBI Protein BLAST