Transcript Information: S_Transcript_117482.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value2E-63
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8521868991518
Replicate 22.2790134268202
Replicate 33.0400114423517
Condition 2: 8 Hour
Replicate 12.6402864202165
Replicate 23.3598747041348
Replicate 33.0451210864259
Condition 3: 24 Hour
Replicate 11.8084042743129
Replicate 21.2120573223981
Replicate 31.940157261932


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117482.p1 GENE.S_Transcript_117482~~S_Transcript_117482.p1 ORF type:complete len:1365 (+),score=184.26,RVT_1|PF00078.23|4.5e-41,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.2e-19,RVT_3|PF13456.2|8.6e+02,RVT_3|PF13456.2|5.2e-17 S_Transcript_117482:1059-5153(+)
ATGAAAATATTAAGCTGGAACTGCCAGGGACTTGGCAACCCCCGGACAGTTGGTACCCTCAGCGACTGGTGTTGGAGGGAACGCCCAAGCATTGTTTTTGTTATGGAGACAATGATCGATAATGGTAGGTTGGAGAGAATTAAAAGGCGTTGCGGTTTCATCAATGGAATCTGTTTGAGTAGTGAAGGCGCTTCAGGTGGGTTGGGGTTTTGGTGGAATAATTTGAATGTGCAGCTCATATCTTATAGCAGGCATCATTGTATGGTGGAGGTTCTAGATAATGATGACAGGCCAAGCTGGAGGGCAGTGGGAGTGTACGGTTGGGCTGAGACGGAGAATAAACATCTAACTTGGGAGATGATGAGAAAATTGTGTGAAGACAGCAACCTACCTATTACTCTCTTTGGTGACTTTAATGAAATTGTCAGCGTAAACGAGAAAGAGGGTGGTGCGAGGAGAAGAGAGTCCCTTATGGATGATTTTCGACACACCATAGACGATTGTGCTTTGCAAGATCTTGGTTATGGGGAACCTTTTTTCACGTGGCAGCGCGGCAGATCAGCAGAAACTTTGGTCCGAGAGAGACTGGACAGATTCTTGGGTGACATAGGTTGGTGTCAAAAATTTCCTTCGGCGGTGGTTAAACACCTTCCGCGGTACTGTTCTGATCATTGTCCCATCATCATTAGTGCGGACAATTCTTATGAAAGAGGACGGAGGACAAAGCGATTTCGTTTTGAACCATTATGGCTGTCCTCGGAGGAATGCCAGGATGTTGTTAGAAAAGCATGGGAAGGAAGGCCTGGAAACGCTCCATATGAAAGGCTAGAAAATGTGGCTAAAGACCTATCAATTTGGGCAAAAAAGCACTTTGGAGACATCAAAAAGAAAATAAGGCAGAATGAAGAGGAACTTAGCAGACTTCAAAATCTACCACCATGTGCTAGCATGCTGGAGAGGTGTGGCAAAGTCATTGGTGAACTTGACAAGCTTCATCGAGAGCAAGAAACTTACTGGTTCATCAGAGCTAGAGCTTGTGAATTAAAGGATGGAGATAAAAATACTTCTTACTTTCACCATAAAGCAAGCCAAAGAAGAAAGAAAAATTTCATCAAAGGATTGGAAGATCAATCTGGGTTATGGCAAGAAAATGAGAAAAAGGTGGAAGAAATAGTGGTTGAATATTATGGGAACCTTTTTGCTACGGGGTGTACACGAGATATAGACTCAGCGCTCACAGGGATTCAGACTCTAGTCTCTCATGAGATGAACACAATGCTGGACCAAGAGCCATCCGAAGAGGAAGTAGCCACCGCCTTGTCTCAAATGCACCCAAATAAGGCTCCCGGCCCCAACGGTATGCATGCGCTCTTTTTTCATAAATTTTGGCATATCGTTGGGTGTGATATTACAGCGTTTATTAAGGAATGGTGGTATGGTAGAACAACTCTCAATAATATTAATCACACAAATGTTGCCTTAATTCCCAAAGTAAAAAACCCAAAAAAGATTACCGAGTTCAGACCCATTAGTCTTTGTAATGTTAACTACAAAATTATTTCCAAATTGCTGGCCAACAGACTAAAAAAGCTCCTTCCCAATCTTATTTCTGAAAACCAAAGTGCTTTTATCCCTAATCGGTTAATTACCGATAATGCTTTGGTTGCTTTTGAGATTTTCCACTCCATGAAAAGAAAGAAACATGGGAAGAAGGGGTTTATGGCGCTTAAGCTCGATATGAGTAAAGCGTATGACCGGGTCGAATGGGCTTTTCTTGAAAACGTTATGGCAAAATTTGGGTTTAGTACCTCTTGGATTTCTAAGGTTATGCATTGTGTGACTAGTACTTCATTTTCATTCCTTATTAATGGTTGGCCCACTGGCATGGTTTTTCCCTCTAGGGGTCTCCGTCAAGGGGACCCAATATCACCTTATCTCTTCATATTGTGTGCAGAGGCTTTCTCTACCCTGCTGACCAAGGCTGCAAACGATAAGCATGTCCATGGGGTCACTGTGTGCCGAGGTGCTCCATCAGTGTCACATCTCTTTTTCGCTGATGATAGCATTTTGTTTTGTCGAGCCAACCTTCCTGAAGCCTCAAAAATTGCTAGCATCATTAAAGCCTATGAGGGTGCGTCAGGGCAGCTCATCAATTATTCGAAATCTGAGGCCTCTTTTAGCAAAAATGTTGAGGCTCCTATGAGGACTCGAATTCTCCAAGCTCTCAATGTTCAACAAGTGGATAAGCACCATAAATATTTAGGCCTTCCCACTTTAATCGGGCGATCCAAAAAGGCCATTTTTGCAGGCATCAAAGAACGTGTTTGGAAGAAATTACAAGGGTGGAAAGAGAGGTTATTGTCTAAACCAGGGAAGGAGGTGCTAATAAAAGTCGTAGCACAAGCGATTCCGACTTATATTATGAGCATTTTTAAAATTTCAGAGGAATTGCTAACTGACATAAATTCTTTGGTGGCACGCTTTTGGTGGGGAGCTCAAGGCGATGAAAGGAAATTGCACTGGTGTAACTGGAATTCCTTGTGCTTGCCTAAGTCTTTAGGTGGCATGGGGTTTCGGGATTTGAAAGTCTTTAATCAAGCACTACTGGCCAAGCAAGCGTGGCGGCTGGTGATTGGAGGTGATACCCTGCTGTTTAGAATTCTAAAAGCGAAGTATTTTAAAAATACTAGCTTTTTAGAAGCTAATCGAGGAGGTGATCCAAGTTATACATGGAGGTCAGTTTGGGGTGCGAAATCCCTCCTTATGGAAGGTCTCAAATGGAGAGTTGGGGATGGGAAAAGGATTAAAGTCTGGGAGGATGCTTGGTTGCCCGGCAATAATCCATATGACGTACCACACCAGCCTGCGGGATGTGATCCTGGCCTAATGGTCCATAACATTATGGATCATGAAAAAAGAGAGTGGAATATGGCAAAGCTAGTTGACACCTTTTGTACAGCCGATGTCATCAAAATAAGCTCAATTCCTCTTAGTTGCTTTCCACGACAGGACATATGCTACTGGTGGCCTTCCAAATCTGGAGTTTTTTCTGTTAAATCAGCTTACTGGCTTGGCATGCTTGGTAGAGCTCAGCTGCAGGCATATGAATTGGGGGAGGAAGCAACTAGTGTTTGGCAATCTATATGGAGCCTAAGGGTGCCTCCCAAACTGAAGCACTTTATTTGGAGAGCTTGTAGAGGTGCGTTAGCTGTCAAGGAAAGACTAGTGGCTAGACACATATGTAACTCAACACAATGTGAAGTCTGCGGAGCAGAGGAGGAAACTGTTATGCATGCACTCTTCGATTGTCGTTTTGCAACCAATATCTGGGGATCGAGCAATTTTGTGGGAACACTATGTGCAGCTCCCTCAAGCTCACTGTTCGAAAGGGTAGGTTGGATTTTGAAGAATGTTGAGGGCAAAGAAGCAAGCCTTTTTCTCACCTTAATATGGGTTGCATGGACAGCCAGGAATGAATTTATTTTTCAACATTCAACACCCAATATTGAGGCTTTGAAAGCAGGATTCGTGAAGCTGGTCCAAGACTATGGTGAATATGCAAGTAAGGTGTTCCTGTCGCCTCAATTGAATGGGACAGGATCACTGCAAGGCTGGAAAGCACCCCCTGAACATGTGATAAAAATCAATACAGATGCAGCAATGATGGAGGATGACTATGTGGGGCTAGGAGTGGTTATTAGAGATAACAATGGTCAACTACTTGCAATTGCTATCAAAAGACTCAGGGCTTGCTGGACACCTACACTAGCAGAGTACATGGCAGGAAGATATGGACTACAAGTGGCCATTCAACTGGGTTTTCATAAAGTAATTCTGGAAAGTGACTCCCTCTCCCTGATAGCAAAACTCAATGCAGACTGTAAAGGGCGAGGGGTTACTGATCTGATCCTTGATGACATTCATTGGTTAAGTTCTTGTTTTTTGTCTATTTCCTTTTCTCATGTTAAACGAGTGGACAATTGTGCAGCCCACCTTGCAGCTAGACTTTCTCCTACTAATGATGAGGAGAGTGTATTGGTTGATAATTTCCCACAAGATATTCTATCCTTGGTGGGTTTAGATAATGAAATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117482.p1 GENE.S_Transcript_117482~~S_Transcript_117482.p1 ORF type:complete len:1365 (+),score=184.26,RVT_1|PF00078.23|4.5e-41,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.2e-19,RVT_3|PF13456.2|8.6e+02,RVT_3|PF13456.2|5.2e-17 S_Transcript_117482:1059-5153(+)
MKILSWNCQGLGNPRTVGTLSDWCWRERPSIVFVMETMIDNGRLERIKRRCGFINGICLSSEGASGGLGFWWNNLNVQLISYSRHHCMVEVLDNDDRPSWRAVGVYGWAETENKHLTWEMMRKLCEDSNLPITLFGDFNEIVSVNEKEGGARRRESLMDDFRHTIDDCALQDLGYGEPFFTWQRGRSAETLVRERLDRFLGDIGWCQKFPSAVVKHLPRYCSDHCPIIISADNSYERGRRTKRFRFEPLWLSSEECQDVVRKAWEGRPGNAPYERLENVAKDLSIWAKKHFGDIKKKIRQNEEELSRLQNLPPCASMLERCGKVIGELDKLHREQETYWFIRARACELKDGDKNTSYFHHKASQRRKKNFIKGLEDQSGLWQENEKKVEEIVVEYYGNLFATGCTRDIDSALTGIQTLVSHEMNTMLDQEPSEEEVATALSQMHPNKAPGPNGMHALFFHKFWHIVGCDITAFIKEWWYGRTTLNNINHTNVALIPKVKNPKKITEFRPISLCNVNYKIISKLLANRLKKLLPNLISENQSAFIPNRLITDNALVAFEIFHSMKRKKHGKKGFMALKLDMSKAYDRVEWAFLENVMAKFGFSTSWISKVMHCVTSTSFSFLINGWPTGMVFPSRGLRQGDPISPYLFILCAEAFSTLLTKAANDKHVHGVTVCRGAPSVSHLFFADDSILFCRANLPEASKIASIIKAYEGASGQLINYSKSEASFSKNVEAPMRTRILQALNVQQVDKHHKYLGLPTLIGRSKKAIFAGIKERVWKKLQGWKERLLSKPGKEVLIKVVAQAIPTYIMSIFKISEELLTDINSLVARFWWGAQGDERKLHWCNWNSLCLPKSLGGMGFRDLKVFNQALLAKQAWRLVIGGDTLLFRILKAKYFKNTSFLEANRGGDPSYTWRSVWGAKSLLMEGLKWRVGDGKRIKVWEDAWLPGNNPYDVPHQPAGCDPGLMVHNIMDHEKREWNMAKLVDTFCTADVIKISSIPLSCFPRQDICYWWPSKSGVFSVKSAYWLGMLGRAQLQAYELGEEATSVWQSIWSLRVPPKLKHFIWRACRGALAVKERLVARHICNSTQCEVCGAEEETVMHALFDCRFATNIWGSSNFVGTLCAAPSSSLFERVGWILKNVEGKEASLFLTLIWVAWTARNEFIFQHSTPNIEALKAGFVKLVQDYGEYASKVFLSPQLNGTGSLQGWKAPPEHVIKINTDAAMMEDDYVGLGVVIRDNNGQLLAIAIKRLRACWTPTLAEYMAGRYGLQVAIQLGFHKVILESDSLSLIAKLNADCKGRGVTDLILDDIHWLSSCFLSISFSHVKRVDNCAAHLAARLSPTNDEESVLVDNFPQDILSLVGLDNEI*

Click here to download the sequence:
Link to NCBI Protein BLAST