Transcript Information: S_Transcript_117618.p1


Annotated TAIR IDAT1G63080.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:23388884-23390728 | Reverse length=614
E-Value2E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.10684159592017
Replicate 30.13396660593414
Condition 2: 8 Hour
Replicate 10.05163532764439
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.10578636072927
Replicate 20.054876057085587
Replicate 30.3664219526167


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117618.p1 GENE.S_Transcript_117618~~S_Transcript_117618.p1 ORF type:5prime_partial len:413 (+),score=56.21,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|6.6e-07,PPR_2|PF13041.2|3.6e-10,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|2.5e-14,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|7.9e-12,PPR_2|PF13041.2|2.7e-13,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|1.8e-18,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.054,PPR_1|PF12854.3|9e-05,PPR_1|PF12854.3|8.4e-07,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|2.8e-09,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|1.4e-10,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|9.5e-08,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.93,PPR|PF01535.16|0.0038,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|5e-06,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.015,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|22,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|6.1e-05,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.00071,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|69,MRP-S27|PF10037.5|4.4,MRP-S27|PF10037.5|0.19,MRP-S27|PF10037.5|2e+02,MRP-S27|PF10037.5|0.013,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|0.027,TPR_19|PF14559.2|5.6e+03,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|2.6 S_Transcript_117618:3-1241(+)
AATGGTAATGGTTTTGGTGTTCGTCCCGATTGCTATTCTTTTAGCATCCTGATCAATTGTTACTGCCGCTTGGGTCGAGTTGATTTGGGCTTCTCTCTTTTGGGTACTCTTATTAAGCTTGGGTTTGTACCTGATCGTGTCGTCTTCACTACCTTACTTGATGGCTTCATTCATTGTAATCAGCTGCCACAAGCTCTCTCCTTTTTGAATACCCTTCTTAATCAAGGCTTCCGACCTGACCTTGTCACTTATGGTGCTTTGTTTAAAGGCTTCTGTCGAGTTGGTAAAAATGTTGGCGCTCTCTCCTTGCTTACCAAGATTGAATCTTCTGGCCTTTGTCAGCCTGACATTGTCATCTATTCCACCCTCATTGACAGCCTGTTCAAAGACAGGCTATTGACAGAGGCCTTGACTCTCTTTTCTGGAATGAAAAACAAGGGCATCTCCCCTAATGTTGTCACCTACACTTCCCTACTTCGTGGTCTTTGTAGTTTAGGCCGATGGGATGAGGCTAAGGAAGCATTGACTAAGATGTTGGATAGCAATGTAGCACCAAATGTCCAAACTTATAGCATGCTGATTGACATGTATTGCAAATGCGGGAAAGTTGAGCAAGCAAAGTCCATACTTGAATTGATGATTGAGAGGGGTGTGTCGCCTAACATTGTTACCTACAATTCTCTTTTGGATGGATATTGTTCGGGATGTCAAATGGATGAAGCATCAGAGCTAATAGATTTGATGAAAAATATTGGATGCCAACCTGATCTTGTCAGCGTCAATACCGTGATCAATGGGTATTGCAAGAGTAATAACCTCGTCGAAGCTTTCAGGCTGCTCAATGAAACGCCTTCTAAAGGATTGAGCCCCGATATATTTACGTATAACACTTTTATAGCTGGCTCGTTCAAGGGTAATAGACTACCATGTGCACTTCAGCTTTTCAAACAGATGCGAGCTCAGGGGATAATTCCAAATGTTGTCACCTGTACTTCATTGGTAGATGGCCTTTCTAAAAATGGCCAACTTGATGAGGCAATAGCAATGTCTAAAGAGATGGAGAGTAATGGAGTGGTAAAGAATCTTGTGACCTATAATGTGTTGATTGATGCCATGTGTGAAAAAGGGAACTGGAAAGAGGCAGCTCATGTCTTTTCCAAGCTCATAACCAAGGGACTGCAACCAGATCATATCACTTATAATGTAATGATAAAAGGACTTTGTAAGAAGGGGCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117618.p1 GENE.S_Transcript_117618~~S_Transcript_117618.p1 ORF type:5prime_partial len:413 (+),score=56.21,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|6.6e-07,PPR_2|PF13041.2|3.6e-10,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|2.5e-14,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|7.9e-12,PPR_2|PF13041.2|2.7e-13,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|1.8e-18,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.054,PPR_1|PF12854.3|9e-05,PPR_1|PF12854.3|8.4e-07,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|2.8e-09,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|1.4e-10,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|9.5e-08,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.93,PPR|PF01535.16|0.0038,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|5e-06,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.015,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|22,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.44,PPR_3|PF13812.2|6.1e-05,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.00071,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|69,MRP-S27|PF10037.5|4.4,MRP-S27|PF10037.5|0.19,MRP-S27|PF10037.5|2e+02,MRP-S27|PF10037.5|0.013,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|2.3e+02,TPR_19|PF14559.2|1.6e+04,TPR_19|PF14559.2|0.027,TPR_19|PF14559.2|5.6e+03,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|2.6 S_Transcript_117618:3-1241(+)
NGNGFGVRPDCYSFSILINCYCRLGRVDLGFSLLGTLIKLGFVPDRVVFTTLLDGFIHCNQLPQALSFLNTLLNQGFRPDLVTYGALFKGFCRVGKNVGALSLLTKIESSGLCQPDIVIYSTLIDSLFKDRLLTEALTLFSGMKNKGISPNVVTYTSLLRGLCSLGRWDEAKEALTKMLDSNVAPNVQTYSMLIDMYCKCGKVEQAKSILELMIERGVSPNIVTYNSLLDGYCSGCQMDEASELIDLMKNIGCQPDLVSVNTVINGYCKSNNLVEAFRLLNETPSKGLSPDIFTYNTFIAGSFKGNRLPCALQLFKQMRAQGIIPNVVTCTSLVDGLSKNGQLDEAIAMSKEMESNGVVKNLVTYNVLIDAMCEKGNWKEAAHVFSKLITKGLQPDHITYNVMIKGLCKKGL*

Click here to download the sequence:
Link to NCBI Protein BLAST