Transcript Information: S_Transcript_117620.p1


Annotated TAIR IDAT1G63080.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:23388884-23390728 | Reverse length=614
E-Value7E-94
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.26710398980042
Replicate 30.17862214124553
Condition 2: 8 Hour
Replicate 10.30981196586634
Replicate 20.21667650014263
Replicate 30.20644888721532
Condition 3: 24 Hour
Replicate 10.10578636072927
Replicate 20.27438028542793
Replicate 30.061070325436117


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117620.p1 GENE.S_Transcript_117620~~S_Transcript_117620.p1 ORF type:5prime_partial len:413 (+),score=61.60,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|2.1e-05,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|1e-18,PPR_2|PF13041.2|9e-15,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|2.6e-16,PPR_2|PF13041.2|2.7e-13,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|2.6e-14,PPR_2|PF13041.2|1.7e-18,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1.6e-11,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|2.8e-09,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|1.4e-10,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|9.5e-08,PPR|PF01535.16|0.00012,PPR|PF01535.16|1.5,PPR|PF01535.16|0.0084,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|0.00018,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|5e-06,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.015,PPR_3|PF13812.2|0.054,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.00071,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|69,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|26,TPR_19|PF14559.2|3.1e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|24,TPR_19|PF14559.2|5.6e+03,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|2.6,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|3,MRP-S27|PF10037.5|2.3e+02,MRP-S27|PF10037.5|0.014,ATP13|PF12921.3|29,ATP13|PF12921.3|7.9e+02,ATP13|PF12921.3|11,ATP13|PF12921.3|2.5e+02,ATP13|PF12921.3|11,ATP13|PF12921.3|5e+02 S_Transcript_117620:3-1241(+)
AATGGTAATGGTTTTGGTGTTCGTCCCGATTGCTATTCTTTTAGCATCCTGATCAATTGTTACTGCCGCTTGGGTCGAGTTGATTTGGGCTTCTCTCTTTTGGGTACTCTTATTAAGCTTGGGTTTGAACTTGATCGTGTTGTCTTCACTACCTTGCTTGATGCCTTCATTCATTGTAATCAGCTGCCACAAGCTCTCTCCTTTTTGAATACCCTTCTTAATCAAGGCTTCCGACCTGACCTTGTCACTTATGGTGCTTTGTTTAAAGGCTTTTGTCGAGTTGGTGACAATGCTGGCGCTCTCTCCTTGCTTACCAAGATTGAATCTTCTGGCCTTTGTGAGCCCAACATTGTCATCTATTCCACCCTTATTGACAGCCTGTGCAAAGAAAAGAAGTTAAATGAGGCCTTGAACCTCTTCTCAAAAATGCAAAGCAAGGGCATCTCCCCTGATGTTGTCTCCTACACCTCCTTACTTCGTGGTATTTGTAGTTTAGGCCGTTGGGATGAGTCTAAGGCTACATTTGCTGACATGGTAGAGAGCAATGTAGCACCAAATGTCCAAACTTATAGCATGCTGATTGACATGTATTGCAAATGCGGGAAAGTTGAGCAAGCAAAGTCCATACTTGAATTGATGATTGAGAGGGGTGTGTCGCCTAACATTGTTACCTACAATTCTCTTTTGGATGGATATTGTTCGGGATGTCAAATGGATGAAGCATCAGAGCTAATAGATTTGATGAAAAATATTGGATGCCAACCTGATCTTGTCAGCGTCAATACCGTGATCAATGGGTATTGCAAGAGTAATAACCTCGTCGAAGCTTTCAGGCTGCTCAATGAAACGCCTTCTAAAGGATTGAGCCCCGATATATTTACGTATAACACTTTTATAGCTGGCTCGTTCAAGGGTAATAGACTACCATGTGCACTTCAGCTTTTCAAACAGATGCGAGCTCAGGGGATAATTCCAAATGTTGTCACCTGTACTTCATTGGTAGATGGCCTTTCTAAAAATGGCCAACTTGATGAGGCAATAGCAATGTCTAAAGAGATGGAGAGTAATGGAGTGGTAAAGAATCTTGTGACCTATAATGTGTTGATTGATGCCATGTGTGAAAAAGGGAACTGGAAAGAGGCAGCTCATGTCTTTTCCAAGCTCATAACCAAGGGACTGCAACCAGATCATATCACTTATAATGTAATGATAAAAGGACTTTGTAAGAAGGGGCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117620.p1 GENE.S_Transcript_117620~~S_Transcript_117620.p1 ORF type:5prime_partial len:413 (+),score=61.60,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|2.1e-05,PPR_2|PF13041.2|3e-09,PPR_2|PF13041.2|1e-18,PPR_2|PF13041.2|9e-15,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|2.6e-16,PPR_2|PF13041.2|2.7e-13,PPR_2|PF13041.2|1.8e-11,PPR_2|PF13041.2|2.6e-14,PPR_2|PF13041.2|1.7e-18,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|3.5,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1.6e-11,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|2.8e-09,PPR_1|PF12854.3|3.7e-10,PPR_1|PF12854.3|1.4e-10,PPR_1|PF12854.3|3.4e-08,PPR_1|PF12854.3|3.9e-09,PPR_1|PF12854.3|4.6e-08,PPR_1|PF12854.3|9.5e-08,PPR|PF01535.16|0.00012,PPR|PF01535.16|1.5,PPR|PF01535.16|0.0084,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|0.00018,PPR|PF01535.16|3.5e-08,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|0.0016,PPR|PF01535.16|5e-06,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|0.015,PPR_3|PF13812.2|0.054,PPR_3|PF13812.2|4.1,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00066,PPR_3|PF13812.2|3.4e-05,PPR_3|PF13812.2|0.00071,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|69,TPR_19|PF14559.2|1.2e+03,TPR_19|PF14559.2|26,TPR_19|PF14559.2|3.1e+02,TPR_19|PF14559.2|86,TPR_19|PF14559.2|24,TPR_19|PF14559.2|5.6e+03,TPR_19|PF14559.2|7.3e+03,TPR_19|PF14559.2|2.6,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|3,MRP-S27|PF10037.5|2.3e+02,MRP-S27|PF10037.5|0.014,ATP13|PF12921.3|29,ATP13|PF12921.3|7.9e+02,ATP13|PF12921.3|11,ATP13|PF12921.3|2.5e+02,ATP13|PF12921.3|11,ATP13|PF12921.3|5e+02 S_Transcript_117620:3-1241(+)
NGNGFGVRPDCYSFSILINCYCRLGRVDLGFSLLGTLIKLGFELDRVVFTTLLDAFIHCNQLPQALSFLNTLLNQGFRPDLVTYGALFKGFCRVGDNAGALSLLTKIESSGLCEPNIVIYSTLIDSLCKEKKLNEALNLFSKMQSKGISPDVVSYTSLLRGICSLGRWDESKATFADMVESNVAPNVQTYSMLIDMYCKCGKVEQAKSILELMIERGVSPNIVTYNSLLDGYCSGCQMDEASELIDLMKNIGCQPDLVSVNTVINGYCKSNNLVEAFRLLNETPSKGLSPDIFTYNTFIAGSFKGNRLPCALQLFKQMRAQGIIPNVVTCTSLVDGLSKNGQLDEAIAMSKEMESNGVVKNLVTYNVLIDAMCEKGNWKEAAHVFSKLITKGLQPDHITYNVMIKGLCKKGL*

Click here to download the sequence:
Link to NCBI Protein BLAST