Transcript Information: S_Transcript_117654.p1


Annotated TAIR IDAT3G18524.1
Annotated Gene NameMUTS Homolog 2
Annotated Gene Symbol(s)MSH2, ATMSH2
Annotation TypeOrtholog
Chromosome Positionchr3:6368151-6372409 | Reverse length=937
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7455335071735
Replicate 22.9650521415919
Replicate 32.1077412666972
Condition 2: 8 Hour
Replicate 13.0690508816191
Replicate 22.6988261851099
Replicate 33.7894840186633
Condition 3: 24 Hour
Replicate 12.3809767190806
Replicate 22.1824411147594
Replicate 32.1085095322795


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117654.p1 GENE.S_Transcript_117654~~S_Transcript_117654.p1 ORF type:complete len:945 (+),score=199.58,MutS_V|PF00488.17|1.1e-93,MutS_III|PF05192.14|4.5e-30,MutS_II|PF05188.13|8.3e-17,MutS_II|PF05188.13|5.2e+03,MutS_II|PF05188.13|3.7e+02,MutS_II|PF05188.13|2.3e+02,MutS_IV|PF05190.14|7.8e+03,MutS_IV|PF05190.14|5.9e-16,MutS_I|PF01624.16|1.8e-14 S_Transcript_117654:241-3075(+)
ATGGAAGACGCTTTGCATTTTCCTGATCACACCAAGCTCCCAGAACTCAAACTCGATGCAAAGCAGGCCCAAGGGTTTCTTTCATTCTTCAAAACCCTCCCTCAGGATTCTCGAGCTGTTCGATTCTTCGATCGCCGGGATTATTTCACTGCCCATGGAGAAAATGCAACTTTTATTGCAAAAACCTATTACCACACCACCACAGCCTTGCGTCAGTTGGGTAATGGTTCTGATGGCCTGTCCAGCGTAACTGTAAGTAAAAGCATGTTTGAGACAATTGCACGAGATCTCCTTCTAGAAAGAACAGACCACGCAATTGAGTTGTATGAGGGTAGTGGTTCTAATTGGAGACTTGTGAAAAGCGGAAGTCCAGGAAATCTAGGCAGTTTTGAAGATGTTCTATTTGCCAACAATGAAATGCAGGATTCTCCAGTAACTGTTTCTTTGTTACCAAACTTTAGGGAAAGTGGATGCACTGTAGGAATGGGTTATGTTGACCTTACTAAGAGAGTGGTCGGACTGTCCGAGTTTCTTGATGATAGCAACTTCACTAATGTGGAGTCAGCTTTGGTTGGGCTTGGTTGCAAAGAATGCCTTCTCCCTGCAGACATTGCCAAGTCTACGGAGGGAAGAGGGTTGCTTGATGCATTATCAAGATGCAGTGTGATGGTCACTGAAAGAAAGAAGTCAGAGTTTAAGGCAAGGGATTTGGTGCAAGATCTTGGCAGGCTCATCAGAGGTTCCATTGAACCAGTACGTGACATGGTTTCTGGATTTGAATTTGCACCTGCTGCTTTGGCCTCCTTACTGTCCTACGCAGAACTGCTTTCAGATGAAAGCAATTATGGAAACTATACTTTTAAGCAGTATAATCTTGACAGCTGCATGAGGTTAGATTCTGCTGCGATGAGGGCATTAAATGTAATGGAAAGCAAAACTGATGCAAACAAAAACTTTAGTTTATTTGGTTTGATGAATAGAACCTGTACTGCTGGAATGGGAAAGCGGTTACTTCACATGTGGCTGAAGCAGCCTCTACTGGATGTAAATGAAATAAATGCTCGGCTAGATTTGGTTCAGTCTTTTGTGGAGGATATAGAACTTCGCCAAGATCTGAGGCAACATTTGAAAAGAATATCGGACATAGAACGATTAATACGCAATCTTCAGAAGAAGAGAGCTGGTTTGCATCATGTTGTAAAACTCTACCAGTCAAGCATCAGACTTCCATATATTAAGGCTGCCCTTGAAAGGTATGATGGACAGTTCTCAGCATTGCTGAAGGAAAGGTTTTTGGAGCCCCTTGATATATGGACTGATGATGATCACTTGAACAAATTTATTGCCCTCGTAGAAACTTCTGTTGACCTTGATCAACTAGACAATGGGGAATACATGATAACGTCTGGTTATGACCCACGGCTTCTTCAACTCAAAGAGGAGCAAGACTCACTTGAGCGCCAGATAGACATCCTGCATAGACAAACTGCAAATTATCTTGATCTCTCTGCTGAAAAAGTTTTAAAGTTAGAGAAGGGCACACAATTTGGACATGTTTTTAGAATCACAAAGAAGGAAGAGCCAAAAATTCGGAAAAAGCTCACTACACAGTTTATTGTCCTGGAAACACGAAAAGATGGGGTCAAATTTACAAACACAAAGCTCAAAAAACTTGGGGACCACTATCAAAGAATACTTGAGGAGTACAAGAATTGCCAGAAAGAGATAGTATTGCAAGTGGTTCAGACAACTGCAAGTTTCTCTGAGGTATTCGAGTCTTTGGCTGCCTTGCTTTCCGAGTTAGATGTGTTGCTTGGCTTTGCTGACTTGGCTGCAAGTTGTCCTGCCTCATACACAAGACCAGATATCACTCCATCTGATATCGGAGATATCATTTTAGAAGGAAGTAGACACCCCTGTGTGGAGGCTCAAGATTGGGTGAATTTCATACCAAATGATTGTAAACTTGTTCGGGGAAAAAGCTGGTTCCAAATTATCACAGGGCCGAACATGGGAGGAAAATCCACTTTCATTAGACAGGTTGGTGTGAACATATTGATGGCTCAAGTGGGTTCCTTTGTTCCTTGTGACAAAGCCAGCATTTCAATTCGTGATTGCATATTTGCTCGAGTTGGTGCTGGCGACTGCCAATTGCGAGGAGTTTCCACTTTTATGCAAGAAATGCTTGAGACTGCATCAATATTGAAGGGAGCAACTGACAAGTCATTGATAATTATTGACGAGCTGGGAAGAGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCAATTTGTGAGCACATTGTTGATGTCATTAAAGCACCTACTTTGTTTGCAACCCACTTTCATGAACTGACAGCACTAGCTCATGATAATGGAGGGGGTGAATCTTCGAATAGAAAGATTGTTGGAGTAGAAAATTACCATGTTAGTGCACACATTGACTCATCAAGCCGCAAGCTAACTATGCTTTATAAGGTTGAGCCAGGGGCCTGTGATCGAAGTTTTGGTATTCATGTTACAGAGTTCGCCAATTTCCCTGAAGCGGTTGTATCTCTTGCTAGAGAAAAGGCTGCTGAATTGGAGGATTTCTCCCCTGCCACAATCATAGCCGATGGTACATCAAAAGAGGTGGGGCTGAAACGGAAGAGGGAGTTTGATACTAACACCATATCTGAGGGTGCAGCAAGAGCTCATCGATTCTTGAAAGAGTTCACTGAGCTTCCATTAGACCAGATGGATTTGAAACAAGCATTGCAACATGTGGGTAAGATGAAGAGTGATTTAGAGAAGGATGCTGAAAACTGTCAATGGTTGAAGCAGTTCCTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117654.p1 GENE.S_Transcript_117654~~S_Transcript_117654.p1 ORF type:complete len:945 (+),score=199.58,MutS_V|PF00488.17|1.1e-93,MutS_III|PF05192.14|4.5e-30,MutS_II|PF05188.13|8.3e-17,MutS_II|PF05188.13|5.2e+03,MutS_II|PF05188.13|3.7e+02,MutS_II|PF05188.13|2.3e+02,MutS_IV|PF05190.14|7.8e+03,MutS_IV|PF05190.14|5.9e-16,MutS_I|PF01624.16|1.8e-14 S_Transcript_117654:241-3075(+)
MEDALHFPDHTKLPELKLDAKQAQGFLSFFKTLPQDSRAVRFFDRRDYFTAHGENATFIAKTYYHTTTALRQLGNGSDGLSSVTVSKSMFETIARDLLLERTDHAIELYEGSGSNWRLVKSGSPGNLGSFEDVLFANNEMQDSPVTVSLLPNFRESGCTVGMGYVDLTKRVVGLSEFLDDSNFTNVESALVGLGCKECLLPADIAKSTEGRGLLDALSRCSVMVTERKKSEFKARDLVQDLGRLIRGSIEPVRDMVSGFEFAPAALASLLSYAELLSDESNYGNYTFKQYNLDSCMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDLVQSFVEDIELRQDLRQHLKRISDIERLIRNLQKKRAGLHHVVKLYQSSIRLPYIKAALERYDGQFSALLKERFLEPLDIWTDDDHLNKFIALVETSVDLDQLDNGEYMITSGYDPRLLQLKEEQDSLERQIDILHRQTANYLDLSAEKVLKLEKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDHYQRILEEYKNCQKEIVLQVVQTTASFSEVFESLAALLSELDVLLGFADLAASCPASYTRPDITPSDIGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFATHFHELTALAHDNGGGESSNRKIVGVENYHVSAHIDSSSRKLTMLYKVEPGACDRSFGIHVTEFANFPEAVVSLAREKAAELEDFSPATIIADGTSKEVGLKRKREFDTNTISEGAARAHRFLKEFTELPLDQMDLKQALQHVGKMKSDLEKDAENCQWLKQFL*

Click here to download the sequence:
Link to NCBI Protein BLAST