Transcript Information: S_Transcript_117992.p1


Annotated TAIR IDAT3G24000.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:8672774-8674881 | Forward length=665
E-Value2E-261
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.992951506692
Replicate 23.420067682168
Replicate 33.7277870807278
Condition 2: 8 Hour
Replicate 15.5744181376092
Replicate 24.5899689458406
Replicate 34.4381020089399
Condition 3: 24 Hour
Replicate 14.2162617071512
Replicate 24.2709918472144
Replicate 33.9098001965377


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_117992.p1 GENE.S_Transcript_117992~~S_Transcript_117992.p1 ORF type:complete len:658 (+),score=120.09,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|0.00092,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.0053,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.76,PPR|PF01535.16|0.018,PPR|PF01535.16|1.7e-05,PPR|PF01535.16|0.41,PPR|PF01535.16|4.2,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|17,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|6.8,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|0.7,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|0.35,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|4.2e+02,DYW_deaminase|PF14432.2|1.3e-39,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|6.8,PPR_3|PF13812.2|0.038,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|25,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|3.7,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|8.7,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|7.1,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.42 S_Transcript_117992:328-2301(+)
ATGAGAAGGCGTATTTCTTTAGGCTTAAGGAGCATAGTAGCCTCTACCAACTTGAAAAGATTCCTTACATTGAAGGTGTATCATGAGCAATTTTCGACATACTTTGTAGCTCCAGTTACATGTAATTTCGCAGAGATTCATGTTTCTAAATGTGAAGAACAAAGAGTTTTTGATGGGTTTGATGTACCCCATTCAAGTTCAAGTCTACAAATACTTGAATATAACAACCAAAATCATATTCCACCCGGTCCTCGTCCCTATACCAGATTGTTGAAGGAATGTGCAGACTTAGGTAAACTCAGAGAAGGACAGATTGTGCATGCCCATGTCCTCAAGTCTGAGTTTAAAGACTTACTTGGTATTCAGAATAGCATCATCAACATGTATGCTAAGTGTGGTGGCTTAGCTGAGGCACGAAGATTTTTTGATGAGATGCCATCTAAAGACATGGTCACTTGGACGACTATGATTATTTCTTATTCACAGAATAATAAGCCTGAGGAGGCTCTTGTCTTGTTCCCTCATATGCTTCGTGTTGGCTTGAAACCAAACAAGTTCACATTCTCTAGCCTTCTAAAAGTTTCTGGGGCAGTATCTGGTGGGAAATATGGTATGGTTATACATGCTATTTGCGTGAAATATGGATGTGATTCGGATGTGTATGTTGGGACTTCTCTAGTGGATATGTATGCAAGATGTGGCCTCATGAATGAAGCTCTGTCAATATTTGAGGGACTTTTGTCCAAAAATGAAGCCTGTTGGAATGCCTTAATTTCAGGTCATGCCAGAATAGATGAGGGTGAGAAAGCTCTTACTTTGTTTCAGAGGATGAAAAGGGAAGATTTTGAACCTGATCAGTTTACATATTCCAGCATGCTTAGTGCATGTGCCAACACTGGAGCCCTGGAGCAAGGCAAGTGGATACATGCTCATGTAGTAAAATCAGGGGTGAAATTGATTGCTTTTGTCGGGCATACTCTTCTTCATATGTATGCCAAATCTGGGAGCATTGAGGATGCAGAAAAGGTTTTTTCCCGACTGATGAAACAAAATGTTGTTTCGTGGAACTCCATGCTGACCGGGTATGCCCAACATGGTCTTGGGGATAAAACACTGGATCAGTTTGAAAAGATGCTAAAAACTGGAATACAGCCTAATGTCATAACCTTTCTTTGTGTTCTTACTGCTTGTAGCCATGCTGGACTTCTAGAGAAAGGACAGTTTTACCTTGACATGATGAAGACCTATGGTTTAGAGCCACACATTGAGCATTATGTCACAGTTGTTGATTTGCTAGGTCGAGCAGGCAAACTTGATCAAGCATTAAGATTTATAGGGGACCTGCCCATTGAGCCCACCGCAGAGATATGGAAAGCTCTGCTGGGAGCGTGCAGGATGCATAAAAATATAGAGTTGGGTGTTTATGCTGCTGAAAGGGTTTTTGAACATGACCCCCGTGATTCAGGTCCATATGTGATACTCTCCAACATATATGCTTCAGCTGGTAGAAAGAATGATGTTGCAAAGGTGAGGAAGATCATGAAGGAAAATGGTGTAAGGAAGGAACCTGCTTGTAGCTGGGTGGAGGTTGGGAACACAGTCCATATGTTTGTTGCAAATGATGATGCCCATCCTCAAAGCGAAGAGATTTATCAGATGTGGGAAATTATAAGTTCCAAGATCAAAGAAATTGGTTATGTTCCAGACACCAGCCAGGTCCTCTTATTCGTAGATGAGCATGAGAGAGAAGCAACATTGCAGCACCACAGTGAAAAGCTTGCCTTGGCCTTCGCACTTCTGAACACCCCTTATGGAGCCACCATCCGAATTAAGAAGAATATTAGAGTATGTAGTGATTGTCATTCAGCAATTAAATTTGCATCGATGATAACTGACAGAGAAATTATAGTGAGAGATACAAATCGTTTCCATCATTTTCGGCATGGATCTTGCTCTTGTGGGGATTACTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_117992.p1 GENE.S_Transcript_117992~~S_Transcript_117992.p1 ORF type:complete len:658 (+),score=120.09,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|0.00092,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.0053,PPR|PF01535.16|4.5e-06,PPR|PF01535.16|0.76,PPR|PF01535.16|0.018,PPR|PF01535.16|1.7e-05,PPR|PF01535.16|0.41,PPR|PF01535.16|4.2,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|17,PPR_2|PF13041.2|0.023,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|6.8,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|0.7,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|0.35,PPR_2|PF13041.2|1.2e+02,PPR_2|PF13041.2|4.2e+02,DYW_deaminase|PF14432.2|1.3e-39,PPR_3|PF13812.2|1.4e+04,PPR_3|PF13812.2|6.8,PPR_3|PF13812.2|0.038,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.043,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|25,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|3.7,PPR_1|PF12854.3|0.0018,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|8.7,PPR_1|PF12854.3|0.27,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|7.1,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.42 S_Transcript_117992:328-2301(+)
MRRRISLGLRSIVASTNLKRFLTLKVYHEQFSTYFVAPVTCNFAEIHVSKCEEQRVFDGFDVPHSSSSLQILEYNNQNHIPPGPRPYTRLLKECADLGKLREGQIVHAHVLKSEFKDLLGIQNSIINMYAKCGGLAEARRFFDEMPSKDMVTWTTMIISYSQNNKPEEALVLFPHMLRVGLKPNKFTFSSLLKVSGAVSGGKYGMVIHAICVKYGCDSDVYVGTSLVDMYARCGLMNEALSIFEGLLSKNEACWNALISGHARIDEGEKALTLFQRMKREDFEPDQFTYSSMLSACANTGALEQGKWIHAHVVKSGVKLIAFVGHTLLHMYAKSGSIEDAEKVFSRLMKQNVVSWNSMLTGYAQHGLGDKTLDQFEKMLKTGIQPNVITFLCVLTACSHAGLLEKGQFYLDMMKTYGLEPHIEHYVTVVDLLGRAGKLDQALRFIGDLPIEPTAEIWKALLGACRMHKNIELGVYAAERVFEHDPRDSGPYVILSNIYASAGRKNDVAKVRKIMKENGVRKEPACSWVEVGNTVHMFVANDDAHPQSEEIYQMWEIISSKIKEIGYVPDTSQVLLFVDEHEREATLQHHSEKLALAFALLNTPYGATIRIKKNIRVCSDCHSAIKFASMITDREIIVRDTNRFHHFRHGSCSCGDYW*

Click here to download the sequence:
Link to NCBI Protein BLAST