Transcript Information: S_Transcript_118111.p1


Annotated TAIR IDAT5G05130.1
Annotated Gene NameDNA/RNA helicase protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1512173-1514918 | Forward length=862
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0992443722407
Replicate 22.1894371316618
Replicate 32.0882996328759
Condition 2: 8 Hour
Replicate 12.2790493468692
Replicate 22.789365352027
Replicate 32.6577011008755
Condition 3: 24 Hour
Replicate 11.695340830695
Replicate 21.9319025135054
Replicate 31.6365448659808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_118111.p1 GENE.S_Transcript_118111~~S_Transcript_118111.p1 ORF type:3prime_partial len:786 (+),score=164.00,SNF2_N|PF00176.19|1.8e-79,HIRAN|PF08797.7|5.4e-17,HIRAN|PF08797.7|1.5e+03,Helicase_C|PF00271.27|2.2e+03,Helicase_C|PF00271.27|1.7e-10,zf-C3HC4_3|PF13920.2|6.6e-08,zf-RING_5|PF14634.2|4.8e-07,zf-C3HC4|PF00097.21|1.8e-06,zf-RING_2|PF13639.2|9.5e+03,zf-RING_2|PF13639.2|2.9e-06,zf-C3HC4_2|PF13923.2|1.2e+04,zf-C3HC4_2|PF13923.2|9.9e-06 S_Transcript_118111:127-2481(+)
ATGTCATCTTTCAATCTTGAAAACATCCAAGAAGATGAAGAACAACAAGAAGACGACTACCAGGAAACCCAATCACAATCAGACCGACAACTTTCCCTATCATCATCAGAAACCTACATGGTAGGTTTTATAATGGTCAACATAGTGGGAATTCAATACTACTCTGGCCGAATTAGTGGCAGAGAAATGGTGGGTCTTGTAAGAGAACCCTTAAACATTTATGATGAGAACGCCATTAGAGTTCACAACACTCGAGGTGATCAAGTGGGCCACATTGAAAGAGGTGTTGCTAAAGTTTTGGCCCCATTAATGGATACCCAGCTCATATTTGTTGAAGGTATTGTCCCCAAAACTCCTAATAGGAATGCTAGGTTTAAGATTCCTTGTCAAGTTCATATCTTTGCTAGAATTGAGGCTTTCCCACTTGTTAAAGATAACATTTTGGGAGGTGGGTTGCAGTTAATTTGTGATGAAAACCCTTCTTTTGCGCTTTCGGATTGGGTGGTGGTGAAGGAAGGGAGGAATAGGAAGGATGTTAGGAGTTTGGATGAGATTTTTAGGTTGGCTGGTGAGAATGTGGGTAAGATTGGGGAGGTAGTCAAGCCATTGGACCCACCTAATGATGTGATTAGTTCTGAGCTTTTTGGTCATCAGAAAGAAGGACTTGGGTGGTTGGTTTGGAGGGAGAATTCGGACGAGTTGCCGCCTTTTTGGGAGGAGAAAGATGGGTTATTTGTTAATGTGTTGACCAATTATCAGACTAGTGTTAGGCCTGAGCCTCTTAGGGGTGGCATTTTTGCTGATGATATGGGGTTGGGTAAGACCTTGACTTTGTTGTCCCTTATTGCTTATGATAGACAATGTGGTGGAAATGGGGTTCGAAATGAGGATGTTGTCGATGATGATGATGATGGCATTCGAGTTGATGATGGTGGTGCTAATAAGGGGAAGAGAGGTCGAAAGGGTAAAAAGCTTAGTACTAGTGAGAAGAAAAGGAAAGTTGATAGTAGTGAATCGAAAAGAACGACTCTAGTTGTGTGTCCTCCTTCTGTATTTTCGACATGGGTGAATCAGCTGTGTCAGCACACTCGGCATAACACGATGAGCTTGTACTGGTTTCATGGTAAGGAGAGGACTCAAAAGGTTGAGGAGCTTAAGAAGTATGATATAGTGCTTACCTCTTATAGTACATTGTCGAATGAGAAAGATAAGGAAGGTTCACCAATCAAGAAGATGAACTGGAGGAGAATCATCTTGGATGAGGGGCATATGATTAAGAATGCTGACTCTCAGCAGAGTCGTGCTGTTAGAGCATTAAATGGTGAGCGAAGATGGATAGTCTCAGGAACACCCATACAGAACAGCTCCTATGACCTGTTTTCGCTTATGGCCTTCCTGAAGTTTGATCCATTCTCCACTAAAAGCTACTGGAATAGTCTTGTACAGCGTCCACTAGCTCAAGGGAATAAATTAGGGATGGAACGACTTCAGGTCTTAATGGCCACTGTTTCGCTGAGGAGAACAAAGGACCAGAATCTGCTTGAGCTGCCGCCTAAATCTATACAGATATGTTATGTGGAACTTCTCCAAGAAGAACGTGAACTATATGATCGTTTGGAAGAAGAAGCCAAGAAGGTTGTAAAGACCTATATCAATGATGGGAGTGTCACATGCAATTATTACACTGTCCTTAGCATAATTTTGAGGCTTCGCCAAATCTGTACGGATGTTGCATTGTGCCCTCATGATATCAAATCTTTGCTCCCAGCTGACAGCATCGAAGACGTATCTAATAATCCTGAACTGCTGGAGAAGATGGTTTCAGTGCTGCAGGATGGTGAAGATTTCGACTGTCCAATTTGTATCTCTCCACCGACAGATATTGTGATTACTTGTTGTGCTCATATATTCTGCAGATCCTGCATAATTAAAACACTGAAGCGCACAAAGGCCAACTGTCCTATGTGCCGCCATCCTTTATCAGAGTCTGATCTCTACTCAGCCCCACCTGCAGAGTCATCAGATACAGACAGTATGGGAGCATCCTCATCTAGAACATCATCAAAAGTGTCCATTCTCTTGAAACTCCTGTTAGAGTCTAAAGATGAGACTGCGACTGTGAAGTCTGTTGTATTCTCACAATTCCGCAAGATGTTGGTATTACTTGAAGAACCACTCAAAGCTGCTGGATTCAAGATATTACGGTTGGATGGAACAATGAGTGCCAAAAAGAGAGCCCGTGTGATTGAAGAATTCGGTGTTTCTGGACCAGATTCACCAACAGTTTTGCTCGCCAGTCTCAAGGCCTGTGGTACTGGTATAAATCTTACAGCTGCTTCGGTGGTCTACTTGTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_118111.p1 GENE.S_Transcript_118111~~S_Transcript_118111.p1 ORF type:3prime_partial len:786 (+),score=164.00,SNF2_N|PF00176.19|1.8e-79,HIRAN|PF08797.7|5.4e-17,HIRAN|PF08797.7|1.5e+03,Helicase_C|PF00271.27|2.2e+03,Helicase_C|PF00271.27|1.7e-10,zf-C3HC4_3|PF13920.2|6.6e-08,zf-RING_5|PF14634.2|4.8e-07,zf-C3HC4|PF00097.21|1.8e-06,zf-RING_2|PF13639.2|9.5e+03,zf-RING_2|PF13639.2|2.9e-06,zf-C3HC4_2|PF13923.2|1.2e+04,zf-C3HC4_2|PF13923.2|9.9e-06 S_Transcript_118111:127-2481(+)
MSSFNLENIQEDEEQQEDDYQETQSQSDRQLSLSSSETYMVGFIMVNIVGIQYYSGRISGREMVGLVREPLNIYDENAIRVHNTRGDQVGHIERGVAKVLAPLMDTQLIFVEGIVPKTPNRNARFKIPCQVHIFARIEAFPLVKDNILGGGLQLICDENPSFALSDWVVVKEGRNRKDVRSLDEIFRLAGENVGKIGEVVKPLDPPNDVISSELFGHQKEGLGWLVWRENSDELPPFWEEKDGLFVNVLTNYQTSVRPEPLRGGIFADDMGLGKTLTLLSLIAYDRQCGGNGVRNEDVVDDDDDGIRVDDGGANKGKRGRKGKKLSTSEKKRKVDSSESKRTTLVVCPPSVFSTWVNQLCQHTRHNTMSLYWFHGKERTQKVEELKKYDIVLTSYSTLSNEKDKEGSPIKKMNWRRIILDEGHMIKNADSQQSRAVRALNGERRWIVSGTPIQNSSYDLFSLMAFLKFDPFSTKSYWNSLVQRPLAQGNKLGMERLQVLMATVSLRRTKDQNLLELPPKSIQICYVELLQEERELYDRLEEEAKKVVKTYINDGSVTCNYYTVLSIILRLRQICTDVALCPHDIKSLLPADSIEDVSNNPELLEKMVSVLQDGEDFDCPICISPPTDIVITCCAHIFCRSCIIKTLKRTKANCPMCRHPLSESDLYSAPPAESSDTDSMGASSSRTSSKVSILLKLLLESKDETATVKSVVFSQFRKMLVLLEEPLKAAGFKILRLDGTMSAKKRARVIEEFGVSGPDSPTVLLASLKACGTGINLTAASVVYLL

Click here to download the sequence:
Link to NCBI Protein BLAST