Transcript Information: S_Transcript_11856.p1


Annotated TAIR IDAT5G26760.2
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:9403869-9407170 | Reverse length=735
E-Value6.3E-167
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.475639192292
Replicate 216.935927232139
Replicate 315.794301397966
Condition 2: 8 Hour
Replicate 19.771817234091
Replicate 210.251330120815
Replicate 38.8213103012782
Condition 3: 24 Hour
Replicate 118.508262905216
Replicate 215.207831788828
Replicate 317.615918742477


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_11856.p1 GENE.S_Transcript_11856~~S_Transcript_11856.p1 ORF type:complete len:766 (+),score=190.28,RPAP2_Rtr1|PF04181.9|3e-21,RPAP2_Rtr1|PF04181.9|3.9e+03 S_Transcript_11856:646-2943(+)
ATGTCCAAGGAACATATAAAGACTGTGGCAGATGCTGTGCACAAGATACAGCTTGCACTTTTAGATGGTATCCAGGATGAAGGCCATCTATTGGCTGCTGGTGCATTGATGTCTAGGAATGATTATCAAGATATAGTTATGGAACGTACGATTTATGAACTCTGTGGTTATCCCTTGTGCTCGAATGCTCTGCCATCTGAGCGCCCTCGAAAGGGGCACTACAGGATTGCGTTGAAGGAGCACAAGGTGTATGACCTTCACGAGACTTACATGTATTGTTCTTCTAGTTGTTTGATCAATAGCCGGGCGTTTGCTGGTAGCTTGAAGGATCAGAGATGCTCGGTTATAAGCCCCGCGAAGCTTAATGAGATTTTGAGTTTGTTTGGGAATGTGGGGGCTGGTTTTGAGGAGGAGATGGGTAAGAGTGGGGATTTGGGGCTCTCTAAATTGAGGATTCAGGAGAATGCTGAGATCAAAGGAGGGGAAGTGTCTTTGGAGGAGTGGATGGGTCCATCGAATGCGATTGAAGGGTATGTACCCAAGAGGGATCGTAATTCTGAGTTGTCATTGTCAAAAGCTTCAAAGAATGGTTCTGAATCTGGTAGTGCAAAAGTGAGTAAGCACAATGACAATGTTCAAAAGAAGGCGGACTTTGAGGTTGCTTTTACACTGAATAAGGATACAACTGGCCCTAACAAAGTTCCTGAAGACAAGAAGTTTTCCAGAACCAACCATTCAAGTACATCAAAACCTTTGCTTGACGAGATGGACTTCATGAGTACTATTATAACCAATGATGAATATACTGTTTCTAAGAGGCCAGATGGTGATTCCAAGCCTGTATCTTCTAGTGCAGCCAAAGAAGGATCGAAATCAAAAAGGTCTGACTCGAACAAGGGGAAAACTTCATTTTTTAATGGTGTAGACTTTATGAGTACTATTATTACTGAAGATGAATATAGCATTTCCAAATTGCCTTCCAGTCAAGCAGTATCTGATCCAAACCAGCTTTCTAAAGAATTTGTAGAGAAACTAGTTTTTTCTGATGCTGGAAAACACCTTAAAGCCTCGGAGGAATCCTCTGGTTCCTTAGAGAATGTTCCTCAGAGTTCTGTGGATTCAGCAGTTATGGAAACTGGAGTTATCACAAATGTGAATTCAGACCTAGCCAGATCTTTTGATCACAGTCAAAATGACGCTTACTCAAGTTCTGTACATGTGAAAGATGAGTGCTGTACTGAGCAAGCTGTTCAATCAAGTAAAGGCACAGTCAAATCTTCTATGAAAAGTTCTAGGCAAAGAAAGGAAGCCCGTTCTGTTACTTGGGCTGATGAGAAAAACAATGGTCTTGATGGTGGAACGCTTTGTAATATCAGAGAATTCAGTAATATGGAAGAAGGCCCCAGCACCTCTAGAGATTCCAACAATATGAAAGAAGCTCCCTGGACCTCAAGTAGCAAAGAGGCAGGGGATCATGATGACTCCGAACGTTTTGCTTCAGCTGAAGCATGTGCCATGGCGATGACCCAGGCAGCAGAAGTTGTTGCATCTGGACAGTCTGATGCAACCGATGCTGTTTCTGTGGCTGGGATCATTGTGCTACCAAATCTTCAACAACCAGATGAGGGGGAGGATCCTATGGATGACGATTCAGTGGAGAAGGACACAACTTCTAGAAAGTGGCCTAAGAAGCCAGGCAACTCAAATTCTGATTTATTTGATTCGGATGACTCATGGTTTGATGCCGCCCCAGAGGGGTTCAGCTTGACTTTATCACCTTTTGCGACAATGTGGAATGCCCTGTTCTCTTGGGTGGCATCATCCTCGCTGGCTTATATCTATGGAAGAGATGAGAGTTCCCATGAAGAGTATTTGTTTGTCAATGGAAGAGAATACCCTGGCAAAGTTATGCTTCCTGATGGCCGTTCATCAGAAATCAAGCAAACTCTAGCTGGCTGTTTAGCCCGAGCTTTGCCTGGAGTGATTGCTGTTCTCAAATTGCCAACACCAATATCTACTCTGGAGCAAGGACTGGCCTGTTTGCTGGACACTATGTCTTTTATGGATCCACTTCCACCATTTAGGTTAAAGCAGTGGCAAGTGATTATTCTTTTGCTCATTGATGCTCTATCAATCTGTAGAATTCCTGGACTGGCTCCATACCTGACAAGCAGGAGGATCTTGATTCCCAAGGTGCTGGATGGTGCTCAGTTAAGTGCAGAAGAGTATGAGATTACGAGAGATCTCGTGATTCCACTGGGCCGGGTGCCTCAGTTCACGATGCAGAGTGGTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_11856.p1 GENE.S_Transcript_11856~~S_Transcript_11856.p1 ORF type:complete len:766 (+),score=190.28,RPAP2_Rtr1|PF04181.9|3e-21,RPAP2_Rtr1|PF04181.9|3.9e+03 S_Transcript_11856:646-2943(+)
MSKEHIKTVADAVHKIQLALLDGIQDEGHLLAAGALMSRNDYQDIVMERTIYELCGYPLCSNALPSERPRKGHYRIALKEHKVYDLHETYMYCSSSCLINSRAFAGSLKDQRCSVISPAKLNEILSLFGNVGAGFEEEMGKSGDLGLSKLRIQENAEIKGGEVSLEEWMGPSNAIEGYVPKRDRNSELSLSKASKNGSESGSAKVSKHNDNVQKKADFEVAFTLNKDTTGPNKVPEDKKFSRTNHSSTSKPLLDEMDFMSTIITNDEYTVSKRPDGDSKPVSSSAAKEGSKSKRSDSNKGKTSFFNGVDFMSTIITEDEYSISKLPSSQAVSDPNQLSKEFVEKLVFSDAGKHLKASEESSGSLENVPQSSVDSAVMETGVITNVNSDLARSFDHSQNDAYSSSVHVKDECCTEQAVQSSKGTVKSSMKSSRQRKEARSVTWADEKNNGLDGGTLCNIREFSNMEEGPSTSRDSNNMKEAPWTSSSKEAGDHDDSERFASAEACAMAMTQAAEVVASGQSDATDAVSVAGIIVLPNLQQPDEGEDPMDDDSVEKDTTSRKWPKKPGNSNSDLFDSDDSWFDAAPEGFSLTLSPFATMWNALFSWVASSSLAYIYGRDESSHEEYLFVNGREYPGKVMLPDGRSSEIKQTLAGCLARALPGVIAVLKLPTPISTLEQGLACLLDTMSFMDPLPPFRLKQWQVIILLLIDALSICRIPGLAPYLTSRRILIPKVLDGAQLSAEEYEITRDLVIPLGRVPQFTMQSGG*

Click here to download the sequence:
Link to NCBI Protein BLAST