Transcript Information: S_Transcript_118795.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value8E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.1043647107262
Replicate 20
Replicate 30.036162227614903
Condition 2: 8 Hour
Replicate 10.71084634390443
Replicate 20.92119376751815
Replicate 30.87771137196982
Condition 3: 24 Hour
Replicate 10
Replicate 20.088877692456264
Replicate 30.49454989029639


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_118795.p1 GENE.S_Transcript_118795~~S_Transcript_118795.p1 ORF type:5prime_partial len:510 (+),score=48.84,UBN2|PF14223.2|5.5e-18,UBN2_2|PF14227.2|1.2e-14,UBN2_3|PF14244.2|8.4e-14 S_Transcript_118795:3-1532(+)
TCCCCACCCTCAACCTCTGTTATTTCTCCAGTTTCTTCGTCTTCACAGCCCCTCTCTACTGCTGCTATCCCATTGTCTTCTGCCCAGTCCACGATTCTGGAACAGCACGGCACCTCGACGCCGGCACGAACTTCGTCTGGGCCACCACGCGGCTCTGCTTTTCCTTACTTCGCGTGGTCCTCTGCATTCCCACCGCCTTCCCTTCCGCACTCGACTGTTCTTCATAGCACCTATGAGATTGGGGAATCCAGTGCTCCAAGACCCTCCATGGCGTCCTTTGGCTTCGCCCCTCATGTCTCAACCGGCCCCTCCTCGTCGCTGTTTGGCTCGGTTTTTCCAGCGGGTGCCTCTCACTTTGGTCATCAATTTCCTCCTGTGGCAGCCCCAAACGTTACTAATTTGGTCACCACTACTCTTACTACTGTTGAGGATTTTCTTTCCTGGCGAACGCAATTCACGGCGTTCCTTGTCTCCCATGGTCTCTTAGGCTATGTTGATGGTTCCATCCCTCGTCCGGCTGAGTCATTTGTTGACTCTCAAGGTATTCCTCGCTACAACTCTGAATATCAATCTTGGTTACGCATTGATCAAAGCATTCGGTGTTGGTTGTATGCCACCTTGTCCAAGGAGATGTTAGTTGAATTTCATGATATTTCTCATTCTTATGAAATTTGGGACCGTTTGCATACTCGCTTTAACACTGATAGTCTTGCTCGGTCTATTGAACTAAAGCGCTCCTTAACTATGATTAAAAAAAGTGATCAACAGTCCATCGAATCCTACTTGCGTGACGTTAAGCGCATTGCCGATGCTCTTGCGTCTATTCGTTGTCCTGTGTCTAATCAAGATTTGGTACAATATACTTTGATGGGGTTACCTGCTGAATATGAGACTATGATTACTATCTTATTACATCAATCTGGTACTTTACGTTTTGATGACCTGCGTGCTACTTTGATCCTCCATGAGCAACGCTTGAAAATGTTTCGTGGGCAAGATCATCCTGTCCCGCATCAGGCCTTTGCTGCTCAGTCCAGTGCGTTGAGTAGGTCCGCTGCAGCCTCGGAAAATGGGTCTACCTCGCGGCAAAGCACTGGTCGCAACAGCAACAATTGGCGTAACCGCGGAAATTCACGCAACAACAACAACAACCGCAATAATAATACCATTAGCAGAGGTCGTGGGGGTCGTGGTCAGCAACAGAGACGCAATGATTCTGTTTCGTCTTCTGGAACTTCCCAAACTGGTTTGCAATCATTTTATGCTGAGCTTGTTAAATCTTTGTCTTATGATAATATTGGTACCTCGAAACTGTGTGCTAACGGTTTCTTGAATGCAGGCACTACTGTCAGTGATGGGATTTTAGGTGCTCCCCCCACTCCCCTTGTATGTCGTATTTGTTATTACCTTGGCCATCCTGCGTCTCAATGTCCTTTCAGGGTCTCCAATGGGTCAGCCACTAATTCGAGTCAAGTGTCCGCTCAATCCTTTGCTTCTATGACTGCTGGTGAAACTAATGATGTTCCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_118795.p1 GENE.S_Transcript_118795~~S_Transcript_118795.p1 ORF type:5prime_partial len:510 (+),score=48.84,UBN2|PF14223.2|5.5e-18,UBN2_2|PF14227.2|1.2e-14,UBN2_3|PF14244.2|8.4e-14 S_Transcript_118795:3-1532(+)
SPPSTSVISPVSSSSQPLSTAAIPLSSAQSTILEQHGTSTPARTSSGPPRGSAFPYFAWSSAFPPPSLPHSTVLHSTYEIGESSAPRPSMASFGFAPHVSTGPSSSLFGSVFPAGASHFGHQFPPVAAPNVTNLVTTTLTTVEDFLSWRTQFTAFLVSHGLLGYVDGSIPRPAESFVDSQGIPRYNSEYQSWLRIDQSIRCWLYATLSKEMLVEFHDISHSYEIWDRLHTRFNTDSLARSIELKRSLTMIKKSDQQSIESYLRDVKRIADALASIRCPVSNQDLVQYTLMGLPAEYETMITILLHQSGTLRFDDLRATLILHEQRLKMFRGQDHPVPHQAFAAQSSALSRSAAASENGSTSRQSTGRNSNNWRNRGNSRNNNNNRNNNTISRGRGGRGQQQRRNDSVSSSGTSQTGLQSFYAELVKSLSYDNIGTSKLCANGFLNAGTTVSDGILGAPPTPLVCRICYYLGHPASQCPFRVSNGSATNSSQVSAQSFASMTAGETNDVP*

Click here to download the sequence:
Link to NCBI Protein BLAST