Transcript Information: S_Transcript_119008.p1


Annotated TAIR IDAT3G49500.1
Annotated Gene NameRNA-dependent RNA polymerase 6
Annotated Gene Symbol(s)RDR6, SGS2, SDE1
Annotation TypeOrtholog
Chromosome Positionchr3:18349193-18353205 | Reverse length=1196
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.419535019747
Replicate 26.3741006254741
Replicate 36.1679349153763
Condition 2: 8 Hour
Replicate 17.6792589304245
Replicate 26.9819428287889
Replicate 37.5875947600513
Condition 3: 24 Hour
Replicate 15.6782230265286
Replicate 25.7222371943592
Replicate 35.7000150021496


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_119008.p1 GENE.S_Transcript_119008~~S_Transcript_119008.p1 ORF type:complete len:1208 (+),score=215.30,RdRP|PF05183.8|1.5e-184 S_Transcript_119008:176-3799(+)
ATGGGATCAGAGCATAATGAAATGGATATGGTGATGACACAGCTCAGCTTCGGTGGTTTTCACAATGAAGTGACTGCCAAAAGGTTTACAGACTACCTCGAAGATGAAATGGGGGTAGTTGTTTGGAGGTGCAGACTGAAGAGATCATGGACTCCTCCAGAGTCATACCCAGACTTCAAAATTCAGAATATCGAAGACGTAGAGAACGCAAATGATTATGAGAGGGTGGAGCCTCATGCCTTTGTGCATTTCGCTAGTCCTGACTCAGTTCGATGGGTTTTGGATGCTGCTGGGCGTGGTGATCTTGTATGGTTGGGGAAACCGTTGAAAGTCAGTTCAGGGCCTGGGAATCCTTTCCGGCTTAGTCAGAGGAGGAGAACCACAACACCATTAAAGTTGTCCGATGTGCGTCTTGATGTCGGTGTTCTTGCTAGTCGGGACGAGTTCCTTGTTGGTTGGAGAGGACCTGATACTGGGTTTGATTTTTTGGTAGATCCCTTTGATGGAACGTGCAAATTTCGGTTCACGAGAGAAACAGTTTTTGCTTTCAAAGGTGAAAACAAAAAAGCTGTAATGAAATGTGATTTCAAAATTGAGTTCTTGGTCAGGGACATTAATGAGATCAAACGTTATAAGGACTTCTCGGGTCTGGTTATTCTGTTGCAACTGTCCTCGGCTCCCTTGATCTATTACCGAACTGCTGATGACGACATTTATGAATCGGTTCCGTTTGATTTGTTGGATGATGATGACCCTTGGATTCGGACAGTAGACTTTACTTCAAGTGGGGCATTTGGTAGGTGTAATTCATACAGAATATCCATGCGTCCTCGTAATGGTCCCAATCTGGAGAGAGCTATTAACCATCTTATGGAAAGGCGGGTCCCTATTGACAGTCCTAGACAGCAGCCGAGTGTAAAGGATGAACCTCAATTTGGTGTGCCAATGTTAGATCCGTTTTTCTGTCTACAGTATGTAGAGAAAGTGTCCTTTGATGTAACATTTATGCTGAATGCTGTTCTCCACAAAGGAATTATAAACCAGCACCAAATATCAGAAAAATTCTTGGATTTACTTGCAACTCAAGCATCAGACGTCAATCTGGCCGCACTGAGACATATTTGTTCTTACAAGCGGCCACTTTATGATGCTTTCAAGAGACTGAAGGTGGTCCAGGATTGGCTGCTGAAGAACCCAAAGCTTCTCAAGGAACCTCAGCCATTGGCTGACGTTGTGGAGGTCAGGAGGTTGATCATCACTCCCACTAAAGCATACTGTCTTCCACCAGAGGTTGAACTTTCAAATCGGGTTCTTAGGCAGTACAAGCACGTATCAGATAGGTTTTTAAGGGTAACATTCATGGATGAAGGCATGCAGATGCTAAATTCCAATGTCCTTTCATACTATGCTTCCCCAATCGTGAAGATGATAACATCAAACTCTTATCTTCAAAGAACGTCAGTGTTCAAGAGGGTCAACTCTATATTAAAGCATGGCTTCTACTTATGTGGCAGAATGTACACTTTCTTGGCGTTCTCGTCCAACCAGTTGAGAGATCGTTCCGCCTGGTTCTTTGCTGAGGACAAGAATGATAGGAATTTGACTGCGAATAACATTAGAAACTGGATGGGCAAGTTTAAAGAGAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACTGTGCTTCTCATCCACATACGCAACAGTCAAAGTTTCACCAGATGAGGTGGAGTCAGAGCTGCCGGATATAAAAAGAAATACTTATATCTTTTCTGATGGAATTGGTATGATAACACCCGACCTTGCAATGGAGGTTGCAGAAAAGTTGCAACTGAAAGACAACCCACCTTCGGCTTATCAGATCAGATTTGCTGGTTGCAAAGGTGTTGTGGCCTGCTGGCCTGGAAAGGACAAAGGAATCAGGCTGTATCTCCGGACAAGCATGAACAAGTTTCAATCTAAGCACACAGTTGTTGAAGTGTGTTCTTGGACGAGGTTTCAACCGGGATTTCTGAACAGGCAGATTGTCACATTACTCTCCGCTCTGGAGGTTCCCGATGAGGTGTTTTGGGGAATGCAGGAATCCATGGTTTCTAAACTCGATCAAATGCTTGTGAACTCAGAAGCTGCATATGATGTCCTGACGACATCATGTGCTGAGCAAGGCAATACTGCCGCGATTATGTTAAGTGCTGGTTTCAAGCCACAAACGGAGCCTCACCTTCGAGGCATGCTAACTTGCATAAGGGCAGGTCAGTTGGGAGATCTTAGAGAAAAGGCTAGGATTTTTGTTCCCTCGGGTAGGTGGTTAATGGGCTGCTTGGACGAGGCTGGTGTGCTCGAACAAGGGCAGTGCTTTGTACAGGTGTCCAGCCCTTCACTTGAAAACTGCTTCTCCAAGCATGGGTCCAGGTTTTCTGAAATGAAGCAGAGCTTACAAGTAATTAAGGGGCTCGTTGTGGTTGCAAAAAATCCTTGTCTCCACCCCGGAGATATACGGATCTTGGAAGCGGTGGATGCCCCCGAATTGCACCATCTTTCTGACTGCCTTGTCTTCCCACAAAAGGGGGAGAGACCTCATCCAAATGAGGCATCAGGAAGTGATCTGGACGGTGATCTTTACTTCGTTACGTGGGATGAGAATCTCATCCCTCCTAGTAAGCGAAGCTGGATACCCATGGAGTATACGCCAGCCGATGAGAAAAAATTGCCTCGTCCAGTCACCAATCTGGACATAATCGACTTTTTCACCAAGAACATGGTTAATGAGAACTTGGGCACAATCTGCAATGCCCACGTTGTTCATGCTGATCTAAGTCTTTATGGAGCGTTGGACGAAAATTGCCTCAAGCTAGCTGAACTTGCTGCGTTAGCTGTTGACTTCCCCAAAACCGGCAAGGTGGTGACCATGCCTGCCGAACTCAAGCCCAGAATGTACCCCGACTTCATGGGAAAACCTGAATCTCAATCTTACAAGTCTGACAAGATCTTGGGTAGAATGTACAGGCGGATCAGAGATGCCTACCACAACCATGACATGACTCCATCTTCTGCATTGAACTTTTCCTCTCGAGATATACCATATGATACGGAGCTCGAGGTTCCGGGTTCAGATGACTTCATCAACGAGGCTTGGGCTCTTAAGTGCTCGTATGTCAGACAGCTCACTGGCCTCCTTGCTCAGTATAAAGTCAGCAAGGAAGAGGAGATTGTCACAGGGCATCTATGGTCGATGCCAAGGCACAGCAGTAGGAAGCAAGGTGAACTCAAGGAAAAGCTCAAGCATGCCTACAATTGTCTGAAGCGAGAATTCAGGCAACATTTTGATAAACTGGGAGCCGAGTATGAGCAGCTAGGAGAGGAGGAGAAGAATACAGCATACGAGCAAAAGGCATCGGCATGGTATCAGGTTACTTACAATTCTGAATGGGTAAGAAGATCAATTGAATTGCAAGGACCTGATGGTGAAGGAGACGGGGGTACCATTTTGAGCTTTGCTTGGATCGCTGCTGATTACCTTGCTCGTATCAAGGTAAGGCACAGTGGAAAGCAATCTCGGGACTACACTAAGAAGCCGATTAATTCACTGGCTATGTATCTTGCTGAGCGGATGCAGATAAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_119008.p1 GENE.S_Transcript_119008~~S_Transcript_119008.p1 ORF type:complete len:1208 (+),score=215.30,RdRP|PF05183.8|1.5e-184 S_Transcript_119008:176-3799(+)
MGSEHNEMDMVMTQLSFGGFHNEVTAKRFTDYLEDEMGVVVWRCRLKRSWTPPESYPDFKIQNIEDVENANDYERVEPHAFVHFASPDSVRWVLDAAGRGDLVWLGKPLKVSSGPGNPFRLSQRRRTTTPLKLSDVRLDVGVLASRDEFLVGWRGPDTGFDFLVDPFDGTCKFRFTRETVFAFKGENKKAVMKCDFKIEFLVRDINEIKRYKDFSGLVILLQLSSAPLIYYRTADDDIYESVPFDLLDDDDPWIRTVDFTSSGAFGRCNSYRISMRPRNGPNLERAINHLMERRVPIDSPRQQPSVKDEPQFGVPMLDPFFCLQYVEKVSFDVTFMLNAVLHKGIINQHQISEKFLDLLATQASDVNLAALRHICSYKRPLYDAFKRLKVVQDWLLKNPKLLKEPQPLADVVEVRRLIITPTKAYCLPPEVELSNRVLRQYKHVSDRFLRVTFMDEGMQMLNSNVLSYYASPIVKMITSNSYLQRTSVFKRVNSILKHGFYLCGRMYTFLAFSSNQLRDRSAWFFAEDKNDRNLTANNIRNWMGKFKERNVAKCAARMGLCFSSTYATVKVSPDEVESELPDIKRNTYIFSDGIGMITPDLAMEVAEKLQLKDNPPSAYQIRFAGCKGVVACWPGKDKGIRLYLRTSMNKFQSKHTVVEVCSWTRFQPGFLNRQIVTLLSALEVPDEVFWGMQESMVSKLDQMLVNSEAAYDVLTTSCAEQGNTAAIMLSAGFKPQTEPHLRGMLTCIRAGQLGDLREKARIFVPSGRWLMGCLDEAGVLEQGQCFVQVSSPSLENCFSKHGSRFSEMKQSLQVIKGLVVVAKNPCLHPGDIRILEAVDAPELHHLSDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYTPADEKKLPRPVTNLDIIDFFTKNMVNENLGTICNAHVVHADLSLYGALDENCLKLAELAALAVDFPKTGKVVTMPAELKPRMYPDFMGKPESQSYKSDKILGRMYRRIRDAYHNHDMTPSSALNFSSRDIPYDTELEVPGSDDFINEAWALKCSYVRQLTGLLAQYKVSKEEEIVTGHLWSMPRHSSRKQGELKEKLKHAYNCLKREFRQHFDKLGAEYEQLGEEEKNTAYEQKASAWYQVTYNSEWVRRSIELQGPDGEGDGGTILSFAWIAADYLARIKVRHSGKQSRDYTKKPINSLAMYLAERMQIR*

Click here to download the sequence:
Link to NCBI Protein BLAST