Transcript Information: S_Transcript_119409.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value1E-158
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.4350471076703
Replicate 24.8146615101531
Replicate 33.9141058594692
Condition 2: 8 Hour
Replicate 16.0600929318471
Replicate 25.0698793679956
Replicate 37.8975982133564
Condition 3: 24 Hour
Replicate 14.0075145971953
Replicate 25.7067151451234
Replicate 37.1674154964179


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_119409.p1 GENE.S_Transcript_119409~~S_Transcript_119409.p1 ORF type:complete len:834 (+),score=149.56,SEO_N|PF14576.2|7.9e-92,SEO_C|PF14577.2|5.9e-79 S_Transcript_119409:142-2643(+)
ATGACAACCAACCCAGCTCCAATGGCCCCCAAACTAACTGCTCCACTGCCACCTCTACAGCAGCCACTGAGAGCCTCTGACCGAGCTGTTCCGTACTATCCCTCTGACGACACCAGGCCACCAATGTCGAGGGGCACTGAACCAGGAGGTTCCCTCTTTCCACCCGAGGATGCCAGGCAACAACTGTCGAGAGGGGGCACTGCACGAGGCTCCTACTATAATCCAACTGAGGATGCCAGGCAACAACAATTGTCGAGGGGCAATGACCAAGGCTCCTTGTTTCCGTCTGAGGAAGCAAGGCAGCAACTAATGCCTAGGCCCATTGAACGAGGCCCCTTATATTCATCTGTCGATGGCAGGCCACCTATGGCAAGAGGCCCCATTGATCAACGCAGCATTTTCCTGACGTCTGATGATCATGCCCTTACCAATCAGATTTTGCAGCTCCATAGCCCTGAGCCTCGTAGTATTAATATCAAGCCTCTTTTCTATCTCGTTGAGGACGTTATCTACCGTGCTACTCAAACTGTTGACGGGCATCCAATGGGTCTATCACAGAGGGAGTCTCTGGAAGGAAGACTTACCCTTAATGGCCTTGAAGAAGTTCCAGATTCAGCACTTATCATTGAACGGATTTCCTGTGAGATGACAAGCAAGCTGCTAAGTGGGACTGATGCACACCACACAACTCTCTCGGTGCTACGAATGTTGCCTGGCTTCACATGGGAAGTCAAGGTAGTCATGACATTGGCGGCATTCTCTTTAACTTATGGAGACTTCTGGCTACTTGTTCAAATTTACTCCACCAACCCTCTCGCAAAATCCATGGCGCTTATAAAGCGCTTGCCTGTGGTTTTGGAGCATTCAGGAACATATAAGGCTCAGTTTGATGCGATCAATAATCTTATCAAGGCCATGCTTGAAACAGCCAGGTGCATTGTCGAGTTTGGAGACTTACCTGCAACTTACATCACAGATGAGGATCCTGAAGTTAAGGCTGCTCTTGGTCATTTTCCGATTGCTGTTTATTGGGTCATCAGAAGTGCTGTTGCTGCTGCTGCGCAGATTACAACCTTATCTAGCACAGGATTTGAATATGTGCGAGCAACTTCAGAAGCATGGGAGCTTTCCAACTGGGCTCACAAGCTGAAAACCATCAGTGAACATCTCAGAAACACACTAAACAACATGTACAGGCTCATAGCTGAGAAGAAAGAAACTGATAATTATAACTTGATTAGAAAAATTATCTACGACACAATGCATATTGACAACATGAAGGTGCTCAAGATTCTCATCAGCGCCAGTGAGACGGAACCTGCACTCTTTGATGGGCCATCCAAGAGAAGGGTCCATCTTGATACAGTAAGGAGGAAAAATGTGTTACTACTCATATCAGGTCTGGATATCTCTCATGAAGAGCTTTTCATCCTTGAGCAAAGCTACACAGAGTCAAAGATGCACGCATTTGAGATCATCTGGATCCCAGTTGTGGACCGTTCAGAGCTGTGGACTGATGCTATGAAAGCTCAATTCCTGAACTTGCAGGCCTCAATGCCCTGGCACTCGGTACATGACCCTTTGATAATTGAAAATTCAGTGATCAGATTCTTCAGGGAGGATTGGCATTACAAGGGCAAGCCTATACTTGTGGTGCTAGACCCTCAGGGAAAAGTTGTGAGCCCAAATGCAATTCACATGATGTGGATTTGGCAAAGCAATGCTTTCCCCTTCACAAGCATCAGGGAGGAGTTGCTTTGGGAGCAGGAGAATTGGCGGCTCGAGCTCCTTGTTGATGATATCGATCCTACAGTTTCTGATTGGATTCGACAAGGCAAGTACATATTCATTTATGGAGGAGACGACATGGAGGGGATTCAGAAGTTCACAAATGAGGCACGTGAAGTGGCACGTGAACTCCAACTGCCGCTAGAGATGATCTATGTAGGGAAGAGCCACCACAAAGAGGCGGTGCGCAAGCTGAGTGCAGCAATAGCACATGAGGAGCTGAGCCATTGCTGGCAAGAACCAGCCCAAGTTTGGTACTTCTGGACTAGAATAGAAAGCATGATCCACTCCAAAATCCAACTGGGAAAATTCAAGGACCAAGGTGACATCATCCTACAAGAGGTCCAAAGGCTCCACAGCTATGACAAGGCCCATGGTGGGTGGGCCGTGCTAGCTAGGGGTTCCGAAATTGTGGTCCATGGGCTTGGTAGGATCGCCTTGACGGCCCTCAAAGAATTCGATAGGCCTCGTGCATTGAAGGAGGGATTTGGTACAGTGTATAGAGAGTTCTATATAAAGACTTACATGAGAGAACATCCCTGTCACCGGATTGAGTTCCCGTCTACTTCTAAGTTGCCACCAAGTATGCTATGCCCTGATTGTCGCCGTGAAATGCAGAAGTACAGCTCTTTCATCTGCTGTCATGAGAATGAAATGTTCCCTGCTGATGTCACCTCCGCTCTTGCTCCTGCCCCTGCCCCATATGAGTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_119409.p1 GENE.S_Transcript_119409~~S_Transcript_119409.p1 ORF type:complete len:834 (+),score=149.56,SEO_N|PF14576.2|7.9e-92,SEO_C|PF14577.2|5.9e-79 S_Transcript_119409:142-2643(+)
MTTNPAPMAPKLTAPLPPLQQPLRASDRAVPYYPSDDTRPPMSRGTEPGGSLFPPEDARQQLSRGGTARGSYYNPTEDARQQQLSRGNDQGSLFPSEEARQQLMPRPIERGPLYSSVDGRPPMARGPIDQRSIFLTSDDHALTNQILQLHSPEPRSINIKPLFYLVEDVIYRATQTVDGHPMGLSQRESLEGRLTLNGLEEVPDSALIIERISCEMTSKLLSGTDAHHTTLSVLRMLPGFTWEVKVVMTLAAFSLTYGDFWLLVQIYSTNPLAKSMALIKRLPVVLEHSGTYKAQFDAINNLIKAMLETARCIVEFGDLPATYITDEDPEVKAALGHFPIAVYWVIRSAVAAAAQITTLSSTGFEYVRATSEAWELSNWAHKLKTISEHLRNTLNNMYRLIAEKKETDNYNLIRKIIYDTMHIDNMKVLKILISASETEPALFDGPSKRRVHLDTVRRKNVLLLISGLDISHEELFILEQSYTESKMHAFEIIWIPVVDRSELWTDAMKAQFLNLQASMPWHSVHDPLIIENSVIRFFREDWHYKGKPILVVLDPQGKVVSPNAIHMMWIWQSNAFPFTSIREELLWEQENWRLELLVDDIDPTVSDWIRQGKYIFIYGGDDMEGIQKFTNEAREVARELQLPLEMIYVGKSHHKEAVRKLSAAIAHEELSHCWQEPAQVWYFWTRIESMIHSKIQLGKFKDQGDIILQEVQRLHSYDKAHGGWAVLARGSEIVVHGLGRIALTALKEFDRPRALKEGFGTVYREFYIKTYMREHPCHRIEFPSTSKLPPSMLCPDCRREMQKYSSFICCHENEMFPADVTSALAPAPAPYES*

Click here to download the sequence:
Link to NCBI Protein BLAST