Transcript Information: S_Transcript_119439.p1


Annotated TAIR IDAT4G11130.1
Annotated Gene NameRNA-dependent RNA polymerase 2
Annotated Gene Symbol(s)RDR2, SMD1
Annotation TypeOrtholog
Chromosome Positionchr4:6780522-6784390 | Forward length=1133
E-Value2E-287
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2295466460324
Replicate 22.963220405996
Replicate 32.9184648855698
Condition 2: 8 Hour
Replicate 15.3597058110879
Replicate 25.7417111535469
Replicate 34.9604698548826
Condition 3: 24 Hour
Replicate 12.4110709171799
Replicate 22.8932525416614
Replicate 32.3477966866465


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_119439.p1 GENE.S_Transcript_119439~~S_Transcript_119439.p1 ORF type:complete len:752 (+),score=141.30,RdRP|PF05183.8|8.8e-88 S_Transcript_119439:52-2256(+)
ATGGCAATAGGGGGCAGAACACAGAGAGAAAGACCCACAGTAAAGGTCTCAGGAATCCCTTACACAGCCATAGCACAAGACCTCTTTGACTTCCTAGAGTCAACAATTGGTAAAGGCACAGTCTTTGCCATTAATATCTTCACTGAGAGGAAAAACTGGAAGTCTAAAGGTTATGGGAGGGTTCAGTTTGAGACCCTTGAAGCTAAGTCTAAAGCAACCCAACTGGCTGCTCAAAACAAGCTCATCTTTAAAGGGTTCTCTCTTTCTTTCTCTTCTTCTAATGAGGATGTTGTTGTTAGGCCTGTTGATCCTAAACATAGGACTAGTCAAGGGGATTTGCATTTGGGTTTGTTGGAAAAGGAGGATTTGATGAGGGTTGTTGATACTTGGGAGAATGTTAGAGTTTGGGTTATGCCTGAGAGGAATTGTATTGAGTTTCAACTTGAGTTTGTTGGGGATTGTTATAAGTTGGAGGTTCAATTTGATGATGTTCTTGAGTCTTTTGGGTGTTTTTTTGAAAATAAGCCCCCTGCTGTTCTTCTCAAGCTGAAGTTTGCTCCAAAGATATCCCAGAAGATTTCAGGGCCCAATCTTTATACAAATTTTAACTCTGACCGCTATTATATCTGCAAGGAAGACCTCGCATTCCGCTGGGTTCGTACTACGGATTTTTCAAACAAGAAGTCCATTGGAGTGTCTTCTGCCATCTGTTGGGAAATTGAAGATAGATCATTGGCTCTAGATATATTTTCTAGCCTTCCTTATTACAAGAAAGATTTGAAAGGTCTTCAATTAGTAGACTCGGATCAGTTTTCTTGTATGTCTGGGCTTCTTCCTCTTGTGAAATCTGAGGAGATTTTGAATTTAGACTATGAGATCCTTTTCCAGATCATCTCCCTTGTTCACAACCACAAAATTAGTCTTGCTGCCGTTGATACAGAATTGATAGATTTTCTCAGCACTTTGAGAGTAGGCACAGGTCTTACAGTTTTTCAAAAGATGCACAAGCTGAGTTCCACATGTTATGAGCCCCTTTCACATATTAAGACTCAGGCACGTATTCTGGGGAATGCTAAGAGTAATACTCCATCTGCTCAAAGTCGCTTGACTAATGATAATATAATGAGTTGTCATAGGGCACTAGTCACCCCCACAAAAATATACTGCATGGGTCCTGAACTGGAGTCCTCAAACTATGTTGTCAAGAACTTTGCTGCGTATGCCTCTGACTTCATGAGAGTAACGTTTGTAGATGAAGACTGGGGCAAGCTACATGCAAATGTTGTCTCAGTCAATATAGAGACAGGCATTTTCTCTAAGCCTTTCAGAACAGATATATATCACCGGATAATATCTGTTCTTCGGGAAGGAATTGTGATAGGGAATAAAAGATTTGAGTTCCTGGCTTTTTCAGCTAGCCAACTGCGTTCGAATTCTGTTTGGATGTTTGCTTCTAATGATGAGGTGAAGGCAGAGGATATCCGACAATGGATGGGTAGCTTTAGCAAGATCCGCAGTGTGTCAAAGTGTGCAGCTAGGATGGGCCAACTGTTTAGTTCTTCAAGGCAGACATTGGTTGTTCCTGCACAAGATGTTGAAGTTATACCCGATATTGAAGTGAATACTGATGGAGTTGACTATTGCTTCTCTGATGGTATTGGGAAGATTTCCCTGTCCTTTGCTAGACAAGTTGCACAAAAGTATGGACTAAAGCAGACTCCATCAGCATTTCAGATTCGTTATGGTGGTTATAAAGGTGTGATAGCTGTAGACCGAAATTCCTTCAGGAAGCTATCTCGACGCCGTAGCATGTTGAAGTTTGAATCAAAAAATAGGATGCTTAACGTCACTAAGGCTTGTGAGGCCATGCCATGTTATATGAATAGAGAGATTGTTACTCTTTTGACCACCTTGGGAGTTGAGGACAGTGGTCTTGAAGCATTGCTGCAAGAACACATGCGTCTTCTTGGAAGCATGCTGACAAGTAGAGATGCAGCTTTGGCTGTGCTTGATGCCATCGGTATAGGTGATGATGGAATTCTTCCAAAAATGTTGCGTCATGGCTATGAACCAAGTGCGGAGCCTTACCTGTTAATGATGCTTCGAGCATACCTGGAGAACCAACTGTCTGATTTAAAAAATAGATGCCGCATGTATGTTCCAAGGGGACGCATCTTGGATGCTTGGATGAGACAGGAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_119439.p1 GENE.S_Transcript_119439~~S_Transcript_119439.p1 ORF type:complete len:752 (+),score=141.30,RdRP|PF05183.8|8.8e-88 S_Transcript_119439:52-2256(+)
MAIGGRTQRERPTVKVSGIPYTAIAQDLFDFLESTIGKGTVFAINIFTERKNWKSKGYGRVQFETLEAKSKATQLAAQNKLIFKGFSLSFSSSNEDVVVRPVDPKHRTSQGDLHLGLLEKEDLMRVVDTWENVRVWVMPERNCIEFQLEFVGDCYKLEVQFDDVLESFGCFFENKPPAVLLKLKFAPKISQKISGPNLYTNFNSDRYYICKEDLAFRWVRTTDFSNKKSIGVSSAICWEIEDRSLALDIFSSLPYYKKDLKGLQLVDSDQFSCMSGLLPLVKSEEILNLDYEILFQIISLVHNHKISLAAVDTELIDFLSTLRVGTGLTVFQKMHKLSSTCYEPLSHIKTQARILGNAKSNTPSAQSRLTNDNIMSCHRALVTPTKIYCMGPELESSNYVVKNFAAYASDFMRVTFVDEDWGKLHANVVSVNIETGIFSKPFRTDIYHRIISVLREGIVIGNKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIRQWMGSFSKIRSVSKCAARMGQLFSSSRQTLVVPAQDVEVIPDIEVNTDGVDYCFSDGIGKISLSFARQVAQKYGLKQTPSAFQIRYGGYKGVIAVDRNSFRKLSRRRSMLKFESKNRMLNVTKACEAMPCYMNREIVTLLTTLGVEDSGLEALLQEHMRLLGSMLTSRDAALAVLDAIGIGDDGILPKMLRHGYEPSAEPYLLMMLRAYLENQLSDLKNRCRMYVPRGRILDAWMRQES*

Click here to download the sequence:
Link to NCBI Protein BLAST