Transcript Information: S_Transcript_119439.p2


Annotated TAIR IDAT4G11130.1
Annotated Gene NameRNA-dependent RNA polymerase 2
Annotated Gene Symbol(s)RDR2, SMD1
Annotation TypeOrtholog
Chromosome Positionchr4:6780522-6784390 | Forward length=1133
E-Value2.6E-189
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0188290170564
Replicate 24.9819202226646
Replicate 33.8899071144071
Condition 2: 8 Hour
Replicate 19.6837380348271
Replicate 29.7148226103031
Replicate 310.102548120475
Condition 3: 24 Hour
Replicate 14.4448646308405
Replicate 25.0051593803844
Replicate 34.8816860138934


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_119439.p2 GENE.S_Transcript_119439~~S_Transcript_119439.p2 ORF type:complete len:403 (+),score=67.25,RdRP|PF05183.8|2.6e-79 S_Transcript_119439:2196-3404(+)
ATGCCGCATGTATGTTCCAAGGGGACGCATCTTGGATGCTTGGATGAGACAGGAATCTTGAATTATGGCCAGGTGTTTGTCCGCTTAACACTGAGAAAGACAGAACTCGAATGTGCAGATCAAAGTGTCTTCCATAAAGTGGATGAGAAAACAGCAATAGTTGTGGGGAAGGTGGTGGTCACCAAAAACCCTTGTTTGCACCCTGGAGATGTGAGAGTGCTTGAGGCTGTGTATGAGGTGGCATTAGAGGAAAAGGGTCTAATGAACTGCCTGATCTTCCCGCAAAAAGGTGAAAGGCCTCATCCTAATGAATGCTCCGGTGGTGATTTAGATGGTGACTTATATTTCATAAGCTGGGATGAGAAGATAATCCCTCCACGGACAGTCGCCCCAATGGACTACACTGGATGCAGACCACGTATCATGGATCATGATGTCACTATGGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAACGACACACTGGGAACCATCTCAACCGCACACTTAGTTCTGGCGGACCGTGAGCCAGAGAAAGCGTTAAGTCCCAAGTGTCTGCGATTAGCTAGTCTTCATTCTATGGCTGTTGACTTTGCAAAGACAGGGGCACCTGCTGAGATGCCTAATGTCTTGAAACCAAGAGAGTATCCTGATTTCATGGAGAGGTGGGACAAACCCATGTACATATCAAAAGGAATACTAGGCAAGCTCTACCGCACCATAGTCGCTTCAACCATTCAAAAATCAGATTTCATTTGGTCGGAGGAAGCTGCTCAAGCTGCTTATGACCGTGATTTGGAGGTGCCCGGATTTGAGGCATTCCTTGATGTGGCAAAAGGTTGTAAAGATATGTACATAGACAAAATGAGTGCAATGCTGTCATTCTATGGAGCAACCAGTGAAGATGAGATACTGACTGGTAACCTCAGGAGCAAGTCCATGTATCTACAGAAGGATAACAGAAGGTATACAGAGATGAGGGATCGTATTTTGGTCTCTGTAAAGGGCTTAAAGAATGAGGCAAAGATTTGGTTCGAGAATAGCTGCAATTTACAAGATCGTCAGAAAATGGCATCAGCATGGTACCATGTTACTTATCACCCGTCTCATTGTCTAGACAGCGGGAATTGCCTGAGTTTCCCCTGGACTGTGGGTGATGTACTGCTTTCCATAAAAGCTGCTAACCGGAAGCAACTATTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_119439.p2 GENE.S_Transcript_119439~~S_Transcript_119439.p2 ORF type:complete len:403 (+),score=67.25,RdRP|PF05183.8|2.6e-79 S_Transcript_119439:2196-3404(+)
MPHVCSKGTHLGCLDETGILNYGQVFVRLTLRKTELECADQSVFHKVDEKTAIVVGKVVVTKNPCLHPGDVRVLEAVYEVALEEKGLMNCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKIIPPRTVAPMDYTGCRPRIMDHDVTMEEIQQFFVDYMINDTLGTISTAHLVLADREPEKALSPKCLRLASLHSMAVDFAKTGAPAEMPNVLKPREYPDFMERWDKPMYISKGILGKLYRTIVASTIQKSDFIWSEEAAQAAYDRDLEVPGFEAFLDVAKGCKDMYIDKMSAMLSFYGATSEDEILTGNLRSKSMYLQKDNRRYTEMRDRILVSVKGLKNEAKIWFENSCNLQDRQKMASAWYHVTYHPSHCLDSGNCLSFPWTVGDVLLSIKAANRKQLL*

Click here to download the sequence:
Link to NCBI Protein BLAST