Transcript Information: S_Transcript_119445.p2


Annotated TAIR IDAT4G11130.1
Annotated Gene NameRNA-dependent RNA polymerase 2
Annotated Gene Symbol(s)RDR2, SMD1
Annotation TypeOrtholog
Chromosome Positionchr4:6780522-6784390 | Forward length=1133
E-Value6E-104
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33266251543976
Replicate 20.27578486946893
Replicate 30.23053420104501
Condition 2: 8 Hour
Replicate 11.1551253088447
Replicate 20.37286414399544
Replicate 30.26644809506227
Condition 3: 24 Hour
Replicate 10
Replicate 20.28329764470434
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_119445.p2 GENE.S_Transcript_119445~~S_Transcript_119445.p2 ORF type:3prime_partial len:240 (+),score=40.02,RdRP|PF05183.8|1.4e-51 S_Transcript_119445:2873-3589(+)
ATGGTCGCCAAAGCCTATCTATGCATTAATAATAATAATTTTGTGATATGCAGGCCTCATCCTAATGAATGCTCCGGTGGTGATTTAGATGGTGACTTATATTTCATAAGCTGGGATGAGAAGATAATCCCTCCACGGACAGTCGCCCCAATGGACTACACTGGATGCAGACCACGTATCATGGATCATGATGTCACTATGGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAACGACACACTGGGAACCATCTCAACCGCACACTTAGTTCTGGCGGACCGTGAGCCAGAGAAAGCGTTAAGTCCCAAGTGTCTGCGATTAGCTAGTCTTCATTCTATGGCTGTTGACTTTGCAAAGACAGGGGCACCTGCTGAGATGCCTAATGTCTTGAAACCAAGAGAGTATCCTGATTTCATGGAGAGGTGGGACAAACCCATGTACATATCAAAAGGAATACTAGGCAAGCTCTACCGCACCATAGTCGCTTCAACCATTCAAAAATCAGATTTCATTTGGTCGGAGGAAGCTGCTCAAGCTGCTTATGACCGTGATTTGGAGGTGCCCGGATTTGAGGCATTCCTTGATGTGGCAAAAGGTTGTAAAGATATGTACATAGACAAAATGAGTGCAATGCTGTCATTCTATGGAGCAACCAGTGAAGATGAGATACTGACTGGTAACCTCAGGAGCAAGTCCATGTATCTACAGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_119445.p2 GENE.S_Transcript_119445~~S_Transcript_119445.p2 ORF type:3prime_partial len:240 (+),score=40.02,RdRP|PF05183.8|1.4e-51 S_Transcript_119445:2873-3589(+)
MVAKAYLCINNNNFVICRPHPNECSGGDLDGDLYFISWDEKIIPPRTVAPMDYTGCRPRIMDHDVTMEEIQQFFVDYMINDTLGTISTAHLVLADREPEKALSPKCLRLASLHSMAVDFAKTGAPAEMPNVLKPREYPDFMERWDKPMYISKGILGKLYRTIVASTIQKSDFIWSEEAAQAAYDRDLEVPGFEAFLDVAKGCKDMYIDKMSAMLSFYGATSEDEILTGNLRSKSMYLQK

Click here to download the sequence:
Link to NCBI Protein BLAST