Transcript Information: S_Transcript_120913.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value1.8E-302
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0022320678506
Replicate 22.3861010649977
Replicate 32.399290117459
Condition 2: 8 Hour
Replicate 12.2729256137383
Replicate 22.3844603565853
Replicate 32.4055501999352
Condition 3: 24 Hour
Replicate 12.5679721971702
Replicate 23.0194733291372
Replicate 33.0045068570358


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_120913.p1 GENE.S_Transcript_120913~~S_Transcript_120913.p1 ORF type:complete len:638 (+),score=91.08,Rhamnogal_lyase|PF06045.7|1.8e-76,CBM-like|PF14683.2|3e-55,fn3_3|PF14686.2|1.2e+04,fn3_3|PF14686.2|2.3e-28,fn3_3|PF14686.2|1.2e+04 S_Transcript_120913:437-2350(+)
ATGTCGTTTCCAGCAGTCCAGCTCCTGATCCAAGATCGTTATGTCATTATACAGAATGGCATAGTTGAAATCAAGATATTGAATCCAGACGGTATGATCACAAATATAAAGTTCAATGGATTCGACAATTTGCTTCAGGAAAAAAGGGAAGAAGACAACATAGCGTATTGGGATATTTACTGGAGTGAAGCTGGATATACAGGAACAAAGTATAATAGGAACAAAATCAGAGGAACAAGCTTTAAAGTTGTAGAAGAGGATGAAGATATGGTGGAGGTTTCCTACACCAGGACATGGGATTCCTCCCATGAAGGCAAGTTCCTTCCATTGAACATTGATACAAGGTACATTGTGCTTCGAGGTTCATCAGGTTTTTACTCCTATGCTATATATGAGAAGTTGAAGGACTGGCCTGGATTCAATCTTGTGCAAGTTAGGATGGTTTTCACTCTTAACAAAGACCTGTTTCATTACATGGCAGTAGCTGATAATAGGCAAAGGAAGATGCCTCTTCCAGATGACAGGTCACCTGAAAGATGCAAAATCCTGGGACCCCCTGAAGCTGTCCTGCTTACAAATCCAATAGAGGATGAATTCAAGGGAGAGGTGGATGACAAATACCAATATTCATGTGAAAACAAGGACCTGCAAGTTCACGGATGGATATGCACTGATCCCCCTACTGGGTTCTGGCAGATTACACCTAGTGATGAGTTCCGAACTGGTGGACCTCTCAAGCAAAATCTCACCTCTCATGTCGGCCCCTATAACCTTGCTATGTTTATTAGTGCACATTATCTTGGGGAGGAAATGGTGTCTAAGTTTGCAGAAGGTGAGGAGTGGAAAAAGGTATTAGGTCCTGTTTTTACATACTTGAATTGTGTGCCTAAGGAAGTCGATTGGCATTGGTTGTGGGAGGACGCCAAGCAACAGACATTGGTTGAAACAGAAAGTTGGCCTTACTCTTTCCCGGCTTCAGAAGATTATCTGAAATCCAATCAACGTGGGAATCTGGTTGGTAGATTGGTAGTCCATGACAAATATTCTGATGATAAATCTGTGCCAGCTGAAGGAGCATATGTAGGGTTAGTTTCCCCAAATGAAGCTAATTCTTGGCAACTAGAAAGCAAGGGTTACCAGTTCTGGACGAGACCAGATAAGGATGGTCGTTTCATGATTAACAACATACGAGCTGGTGGTTACAACTTATATGCCTGGGTTCCCGGATTCATAGGAGACTATGTACACAACAAGATCATCTCTATTACTCCAGGTTGTGAAATTGATATGGGTGAGATTGTATATGAACCACTACGTGATGGACCGACCTTGTGGGAGATTGGTATCCCTGATAAGACAGCTCGAGAATTTTACATCCCTGATCCCGATCCTTTGTATGCCAATAAACTCTATGTCAACCATCCTGACAGGTTTAGACAGTATGGACTTTGGGATAGATATACGGATTTATATCCTAACGAAGATCTTATATATACAGTTGGCGTCAATGATTACCGAAAGGACTGGTTCTTTGCTCAAGTTACCAGGAGAAATGACAATGTGTACCAAGGTACTACATGGCAGATCAGGTTCAATCTTGACAATGTGGATGAAAACGGTGTCTATAAACTGCGGTTGGCACTTGCGACAGCAAATGCAGCTGAATTACAGGTTCGAGTAAACGATCCAAGTGCAGATCCTCCAATATTCACAACAGGACTAATAGGGAAAGAGAACGCGATTGCAAGACATGGGATTCACGGGCTCTACAGGCTTTATACCGCGAGTATAAAAGGCACAAAGCTAGTACAAGGCGATAACACCATCTTCTTGACTCAAGCAAGGGGTGGCAGCCCTTTTGTTGGGATCATGTATGACTACATTCGCCTTGAAGGACCTCCTGGTCCTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_120913.p1 GENE.S_Transcript_120913~~S_Transcript_120913.p1 ORF type:complete len:638 (+),score=91.08,Rhamnogal_lyase|PF06045.7|1.8e-76,CBM-like|PF14683.2|3e-55,fn3_3|PF14686.2|1.2e+04,fn3_3|PF14686.2|2.3e-28,fn3_3|PF14686.2|1.2e+04 S_Transcript_120913:437-2350(+)
MSFPAVQLLIQDRYVIIQNGIVEIKILNPDGMITNIKFNGFDNLLQEKREEDNIAYWDIYWSEAGYTGTKYNRNKIRGTSFKVVEEDEDMVEVSYTRTWDSSHEGKFLPLNIDTRYIVLRGSSGFYSYAIYEKLKDWPGFNLVQVRMVFTLNKDLFHYMAVADNRQRKMPLPDDRSPERCKILGPPEAVLLTNPIEDEFKGEVDDKYQYSCENKDLQVHGWICTDPPTGFWQITPSDEFRTGGPLKQNLTSHVGPYNLAMFISAHYLGEEMVSKFAEGEEWKKVLGPVFTYLNCVPKEVDWHWLWEDAKQQTLVETESWPYSFPASEDYLKSNQRGNLVGRLVVHDKYSDDKSVPAEGAYVGLVSPNEANSWQLESKGYQFWTRPDKDGRFMINNIRAGGYNLYAWVPGFIGDYVHNKIISITPGCEIDMGEIVYEPLRDGPTLWEIGIPDKTAREFYIPDPDPLYANKLYVNHPDRFRQYGLWDRYTDLYPNEDLIYTVGVNDYRKDWFFAQVTRRNDNVYQGTTWQIRFNLDNVDENGVYKLRLALATANAAELQVRVNDPSADPPIFTTGLIGKENAIARHGIHGLYRLYTASIKGTKLVQGDNTIFLTQARGGSPFVGIMYDYIRLEGPPGPE*

Click here to download the sequence:
Link to NCBI Protein BLAST