Transcript Information: S_Transcript_121219.p1


Annotated TAIR IDAT5G52450.1
Annotated Gene NameMATE efflux family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21289042-21291749 | Reverse length=486
E-Value4.2E-206
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3528511337045
Replicate 25.3900810927262
Replicate 34.62022995055
Condition 2: 8 Hour
Replicate 14.2827388421571
Replicate 24.2149859756007
Replicate 34.5456155348097
Condition 3: 24 Hour
Replicate 14.4322952009901
Replicate 24.9269155600755
Replicate 34.7519793806741


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_121219.p1 GENE.S_Transcript_121219~~S_Transcript_121219.p1 ORF type:5prime_partial len:483 (+),score=59.81,MatE|PF01554.14|5.5e-33,MatE|PF01554.14|5.6e-31 S_Transcript_121219:1-1449(+)
GAAATGGAGAGCAAAGAAAACACGCACCTTGAAAATCTGTTGATCAAAACCGAGGAAGGAAGAAGAAATGAAATTAGGTGGTTTGATAACACTCGACAATCCGAAATTTTGGAAGAAGCAAAGAGGCAAGTATGGCTAGCAGGGCCTCTAATAGCAGTGAGCTTATTGCAGTATTGTATTCAAATCATTTCAATTATGTTCGCTGGACATCTTGGGGTGCTGCCTTTATCAAGTGCTTCCATTGCCACTTCTTTTTCTTCTGTCACCGGTGCTAGCGTTCTGGCGGGCATGGGAAGTGCATTGGAGACGCTATGTGGACAATCCTACGGAGCTAAACAATACAAAATGCTTGGGATTTACACACAAAGAGCCATGATAAGCCTTCTAGCCACAAGCATCCCTCTAGCTATGATCTCATATTACACTGACAAAATTCTCATTCTCTGTGGCCAAAACCATGACATAGCAAAGGGTGCTGGAATTTTCAACCGTTGGATGATTCCATCCCTTTTTGCTTACTCCCTTCTTCAATGTCTCAACAGATTTCTTCAAACTCAGAACATTGTCTTCCCAATGCTCATAAGTTCGGGTGTAACTGCTTCTCTACATGTTCTCGTTTGTTGGGTTCTCGTTTTCAAGCTTGGTCTCGGGATCAAGGGAGCTGCCATGGCCAACAATGTGTCATATAGCCTTAATGTTTTGTTGTTGGGAATTTATGTTGTGTCTTCCCCTGCTTGCCAGATCACTTGGACCGGGTTCTCAAGCGAAGCATTACATGATCTATGGAGTTATCTTAAACTTGCTATTCCTTCTGCAACCATGATTTGTCTCGAGTATTGGTCTTTTGAAATGGTGGTGCTTTTATCAGGTCTTCTTCCAAACCCAAAAGTAGAGACATCTGTGTTATCTATAAGCCTCAACACATGTTGGATGGTTTACATGATATCCTATGGTCTTGGTGGAGCCATAAGCACAAGAGTATCAAATGAGCTAGGAGCAGGACATCCTGAAAGGGCAAAATTAGCAGTGAAAGTAATGGTGATGATGTCGGTTTCAGAGGGCTTAGTTGTGGCAGCCGTTACCATTTTGGTGCGCCATGTTTGGGGAAGGTTGTACAGCGACGAGGATGAAGTGATCAATTATGTTGCTAGAATGATGCTTTTGCTTGCACTCTCAGATTTCTTGGATGGAATTCAGTGTATGCTTTCAGGAGCTGCAAGAGGTTGCGGGTGGCAGAAATTGTGTGCTTTCATAAATCTTGGAGCTTACTATTTTGTGGGCATTCCTTGTGCTGTGCTCTTCTCATTTGTTTTGCATATTGGGGGCATGGGACTTTGGATGGGGATTATATGTGGAATGTCTGTGCAAATCATAGCACTTGTCACTGTAAATTTGTGTACAGACTGGGGAAAAGAGGCTAGAAGAGCTTTAGAAAGGATTGTTTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_121219.p1 GENE.S_Transcript_121219~~S_Transcript_121219.p1 ORF type:5prime_partial len:483 (+),score=59.81,MatE|PF01554.14|5.5e-33,MatE|PF01554.14|5.6e-31 S_Transcript_121219:1-1449(+)
EMESKENTHLENLLIKTEEGRRNEIRWFDNTRQSEILEEAKRQVWLAGPLIAVSLLQYCIQIISIMFAGHLGVLPLSSASIATSFSSVTGASVLAGMGSALETLCGQSYGAKQYKMLGIYTQRAMISLLATSIPLAMISYYTDKILILCGQNHDIAKGAGIFNRWMIPSLFAYSLLQCLNRFLQTQNIVFPMLISSGVTASLHVLVCWVLVFKLGLGIKGAAMANNVSYSLNVLLLGIYVVSSPACQITWTGFSSEALHDLWSYLKLAIPSATMICLEYWSFEMVVLLSGLLPNPKVETSVLSISLNTCWMVYMISYGLGGAISTRVSNELGAGHPERAKLAVKVMVMMSVSEGLVVAAVTILVRHVWGRLYSDEDEVINYVARMMLLLALSDFLDGIQCMLSGAARGCGWQKLCAFINLGAYYFVGIPCAVLFSFVLHIGGMGLWMGIICGMSVQIIALVTVNLCTDWGKEARRALERIVS*

Click here to download the sequence:
Link to NCBI Protein BLAST