Transcript Information: S_Transcript_121223.p1


Annotated TAIR IDAT5G52450.1
Annotated Gene NameMATE efflux family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21289042-21291749 | Reverse length=486
E-Value4E-123
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.24021753329
Replicate 20.72828625723835
Replicate 30.64460048447536
Condition 2: 8 Hour
Replicate 10.41408524887637
Replicate 21.6072978634367
Replicate 30.70362992094113
Condition 3: 24 Hour
Replicate 10.59384149294819
Replicate 21.0121702257398
Replicate 31.0774465571118


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_121223.p1 GENE.S_Transcript_121223~~S_Transcript_121223.p1 ORF type:5prime_partial len:515 (+),score=55.62,MatE|PF01554.14|6.3e-33,MatE|PF01554.14|1.9e-24 S_Transcript_121223:1-1545(+)
GAAATGGAGAGCAAAGAAAACACGCACCTTGAAAATCTGTTGATCAAAACCGAGGAAGGAAGAAGAAATGAAATTAGGTGGTTTGATAACACTCGACAATCCGAAATTTTGGAAGAAGCAAAGAGGCAAGTATGGCTAGCAGGGCCTCTAATAGCAGTGAGCTTATTGCAGTATTGTATTCAAATCATTTCAATTATGTTCGCTGGACATCTTGGGGTGCTGCCTTTATCAAGTGCTTCCATTGCCACTTCTTTTTCTTCTGTCACCGGTGCTAGCGTTCTGGCGGGCATGGGAAGTGCATTGGAGACGCTATGTGGACAATCCTACGGAGCTAAACAATACAAAATGCTTGGGATTTACACACAAAGAGCCATGATAAGCCTTCTAGCCACAAGCATCCCTCTAGCTATGATCTCATATTACACTGACAAAATTCTCATTCTCTGTGGCCAAAACCATGACATAGCAAAGGGTGCTGGAATTTTCAACCGTTGGATGATTCCATCCCTTTTTGCTTACTCCCTTCTTCAATGTCTCAACAGATTTCTTCAAACTCAGAACATTGTCTTCCCAATGCTCATAAGTTCGGGTGTAACTGCTTCTCTACATGTTCTCGTTTGTTGGGTTCTCGTTTTCAAGCTTGGTCTCGGGATCAAGGGAGCTGCCATGGCCAACAATGTGTCATATAGCCTTAATGTTTTGTTGTTGGGAATTTATGTTGTGTCTTCCCCTGCTTGCCAGATCACTTGGACCGGGTTCTCAAGCGAAGCATTACATGATCTATGGAGTTATCTTAAACTTGCTATTCCTTCTGCAACCATGATTTGTCTCGAGTATTGGTCTTTTGAAATGGTGGTGCTTTTATCAGGTCTTCTTCCAAACCCAAAAGTAGAGACATCTGTGTTATCTATAAGCCTCAACACATGTTGGATGGTTTACATGATATCCTATGGTCTTGGTGGAGCCATAAGCACAAGAGTATCAAATGAGCTAGGAGCAGGACATCCTGAAAGGGCAAAATTAGCAGTGAAAGTAATGGTGATGATGTCGGTTTCAGAGGGCTTAGTTGTGGCAGCCGTTACCATTTTGGTGCGCCATGTTTGGGGAAGGTTGTACAGCGACGAGGATGAAGTGATCAATTATGTTGCTAGAATGATGCTTTTGCTTGCACTCTCAGATTTCTTGGATGGAATTCAGTGTATGCTTTCAGGTTCAAATTCTTTCATCCAGTGTCACTTGTCATATTACCAACTAATTGTGCTGCTTTTAATACTACTGCCTCCGTCGCACAATCAACTTCCTGTTGTGTTTGTCAATTACAAAAGAAGCAAGAAGTTGATTTTGCGACAAGAAGAAATACTAACAACTAGTCTACTCGATCTTATACTTAGGAGCTGCAAGAGGTTGCGGGTGGCAGAAATTGTGTGCTTTCATAAATCTTGGAGCTTACTATTTTGTGGGCATTCCTTGTGCTGTGCTCTTCTCATTTGTTTTGCATATTGGGGGCATGGTGATCTCTTCATCTTTGGCTTCTCTTATGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_121223.p1 GENE.S_Transcript_121223~~S_Transcript_121223.p1 ORF type:5prime_partial len:515 (+),score=55.62,MatE|PF01554.14|6.3e-33,MatE|PF01554.14|1.9e-24 S_Transcript_121223:1-1545(+)
EMESKENTHLENLLIKTEEGRRNEIRWFDNTRQSEILEEAKRQVWLAGPLIAVSLLQYCIQIISIMFAGHLGVLPLSSASIATSFSSVTGASVLAGMGSALETLCGQSYGAKQYKMLGIYTQRAMISLLATSIPLAMISYYTDKILILCGQNHDIAKGAGIFNRWMIPSLFAYSLLQCLNRFLQTQNIVFPMLISSGVTASLHVLVCWVLVFKLGLGIKGAAMANNVSYSLNVLLLGIYVVSSPACQITWTGFSSEALHDLWSYLKLAIPSATMICLEYWSFEMVVLLSGLLPNPKVETSVLSISLNTCWMVYMISYGLGGAISTRVSNELGAGHPERAKLAVKVMVMMSVSEGLVVAAVTILVRHVWGRLYSDEDEVINYVARMMLLLALSDFLDGIQCMLSGSNSFIQCHLSYYQLIVLLLILLPPSHNQLPVVFVNYKRSKKLILRQEEILTTSLLDLILRSCKRLRVAEIVCFHKSWSLLFCGHSLCCALLICFAYWGHGDLFIFGFSYV*

Click here to download the sequence:
Link to NCBI Protein BLAST