Transcript Information: S_Transcript_121305.p1


Annotated TAIR IDAT4G01030.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:448336-450642 | Reverse length=768
E-Value2.9E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.9864360209075
Replicate 27.1762126034443
Replicate 39.1243010097813
Condition 2: 8 Hour
Replicate 15.8139748338289
Replicate 27.1354422503549
Replicate 36.5742561560627
Condition 3: 24 Hour
Replicate 17.9561365134164
Replicate 27.204706416902
Replicate 38.0179551687843


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_121305.p1 GENE.S_Transcript_121305~~S_Transcript_121305.p1 ORF type:complete len:950 (+),score=164.07,PPR_2|PF13041.2|5.3e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|77,PPR_2|PF13041.2|0.089,PPR_2|PF13041.2|6,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|5.4e-05,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|3.2e-07,PPR_2|PF13041.2|1.8e-13,PPR_2|PF13041.2|2.3e-12,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|0.19,PPR_2|PF13041.2|44,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|72,PPR|PF01535.16|1.5,PPR|PF01535.16|2.8e+02,PPR|PF01535.16|0.91,PPR|PF01535.16|2.5e-09,PPR|PF01535.16|0.0039,PPR|PF01535.16|0.5,PPR|PF01535.16|0.00018,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|6.7e-06,PPR|PF01535.16|7.6e+03,PPR|PF01535.16|0.011,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.082,PPR|PF01535.16|0.036,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|3.6,PPR|PF01535.16|1.3e+04,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.95,PPR_1|PF12854.3|2.5e-09,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|68,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.05,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|2.7e+03,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|20,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|1.6e+04,DYW_deaminase|PF14432.2|1.3e-31 S_Transcript_121305:95-2944(+)
ATGGTCATATTTTTCCACACAACGGTCAATTCTTCGATGGACAAACTTGCTGCCATTCCCTCCTCATTCAATTGCTTCAACTCGCTTTTGCTTCAAAATCCTTCCACTAAAAAGCTTAATTTTAGTTTTACATGTCACTCTCTTGGAGTGGTTGATGTTCCTCTATCTGTTTCTCTCTCATCATCACTTTTACATCTTACACAAATCTCTAATTATTTTGATGATCCTAAAAAGATCACTTCTTTGAGCTTAGTTAAGCAAGTGCATGCCCAGATGATGAAATTACCAAAAGGGGTAGTTTCGGATGATCATTTTGCTGAGAATTTGATCACTTCATACTTAAATTTTCGTGATTTTCATTCAGCAGTGATGGTTTTCTTTCTGGGTTTTCGACGGAATTTCGTATTGTGGAGATCATTTTTGGAGGAATTCAAGAGTTTGGGGGGTGACCCGATTGAGATTCTTGAGGTTTTCAGCGAGTTACATAGTAAAGGAGTGGACTTTGATAATAGAATTCTTACTGTTATGTTGAAACTTTGTGCTATTTTGATGGATAAATGGCTAGGAGTTGAAGTTCATGCTTGTTTGATCAAGAGGGGTTTTGAATTGGATGTTCATTCTAAGGGTGCTTTGATGAATTTTTATGGAAGGTGTTGGGGAATTGATGATGCACACAAGATGTTTTATGAAATGCCTGAACCAGAAGTTTCTTTGTGGAATGAAGCAATTGTGGCTGCTCTTCAGAATGCTAGCCCAATGAAGGCCCTGCAATTGTTTCAGGACATGCAGCTTTCATTCGCGAAGCCAGACATTTTCACAATTGCCAAAGCTTTGCAAGCTTGTGCAAAGAGAAGGGCTCTGTCTGAAGGGAAACAAATTCATGGGTATGTGTTTCGAAATGACATGGAAAGGGATTTATCGATATGCAATGGATTCATTAGCATGTACTCTAAGAACAGCAAGGTAGAACTAGCAAGAAAGGTTTTCGATACAGTAGAGAACCCCAATCTATCTTCATGGAACTCAATGATTTCTGGTTATGCATCACTTGGTTATTTCGTTGAGGCAATGGAGCTATTCCATGAGATGGAGTCTCACAATGTGAAACAGGATACAGTAACATGGAATTGCCTTTTGTCGAGTCATCTGCAATATGGGCTATTTCATGAAGTTCTGAGCATTCTAAAGAACATGTTGGTTGCGAAAGTGAAGCCTAACCCAGGCTCCATCACTCCTGCGATTCAAGCAATCAGTGAATTGAATTTAGTGAAATCAGGAAAGGAAATTCATGGCTTTGTTTTGAGGCATGGACTTGAGTTTGACGAGTATGTACAAACAACATTGTTGGACATGTATGTGAAGATGGATCAACTGGTGAAAGCTCAAGCAGTATTTAACTTCATGAAGACAACAAATATTGTTGCATGGAATTCTTTGATTTCTGGATATTCCTCGAAGGGGATATTTGATGCTTCTGCGGATCTGATAAATCGAATGGAACAGGAAGGCATAAAACCAGATATAGTTACATGGAACTCTCTACTTTCCGGGTATTCACTGAATGGCCATGTGAACGACGCTCTGGCAGTGATGGATAGAATGAAATCTTCAGGTTTGACACCTAATGTGGTTTCATGGACTGCCCTGATATCAGGAAGTTCGCAGAATGGAAAACACAAAGAGGCCTTCAATTTCTTCCTCCAAATGCTAGAAGAAGATGTCAAGCCTAACTCAGCCACAATCTCAAGCTTACTTCAAGCTTGTGCTGGTATGTCTTGGTTACGGAAAGGCAAAGAGATACATTGTTGGTGCATAAGAAATGGGTTCCATGAGGATGTCCTAGTGGCAACATCTCTTATACAGATGTACATCAAGTCAGGTAGTCTAACCAGTGCCTCTGATATTTTCGACAGGATGAAGAATAAGACAGTTGCCACTTGGAATTGCATGATTATGGGGTTGGCAGTTTACAGCCAGGGGAAAGAGGGGATCGTTTTCTTTCACAAGATGTGTGAACTGGGATTGCAGCCAGATGCTATAACTTTCACTGCTCTTCTATCTGGTTGTAAGAACTCAAGCTTACTTAATGAAGGCTGGAAGTATTTTGACAGTATGAAAGCTGATTACAACATAGTGCCAAGAATTGAGCATTATTCTTGCATGGTTGATCTTCTAGGAAGAGCAGGCTATCTTGACGAAGCTTGGGATTTCATGCAGACGATGCCCATTAAGCCAGATGCTTCAGTTTGGGGTTCCCTTCTCCAATCCTGCCGCGCTCATAACAACTTGCAGCTCGGGAAAATGGCAGCTGAAAACCTGTTCCAGCTAGAACCAAACAATTCTGCTAATTATGTCGTCATGATGAATTTGTACTCTATGTCACATAGATGGGATGATGTTGTTAATGTGAGAGAAATGATGAGTGCTCGGGGAGTTACAATTCAGCATGGATGGAGCTGGATAGAGTTAGACCGTAAGGCTCATATTTTCAGCGAAGACGACCCCCATCCTGATATAGGAAGCATATACTTCGAGCTATACCAGCTGGTGTCAGAGATGAAGAAAGTGGGTTACATCCCTGATACCAAATCAGTGTATCAAGATATTGATGAATCTGAAAAAGAGAAGGTGCTGCTAAGTCATACTGAGAAATTAGCCATTACATTCGGGTTGATCAAGATGAAAAATAGCTCACCAATCCGGGTGATCAAGAGCACCAGAATGTGCTCTGACTGTCACATAGCTGCAAAATACATGTCTTTGGTTAGAAATCGTGAGATAATCCTAAAAGATGGAGTTCGATTTCACCATTTTCGTGAAGGAAGGTGCTCTTGCAATGACTGTTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_121305.p1 GENE.S_Transcript_121305~~S_Transcript_121305.p1 ORF type:complete len:950 (+),score=164.07,PPR_2|PF13041.2|5.3e+03,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|77,PPR_2|PF13041.2|0.089,PPR_2|PF13041.2|6,PPR_2|PF13041.2|3.8e-07,PPR_2|PF13041.2|5.4e-05,PPR_2|PF13041.2|0.66,PPR_2|PF13041.2|3.2e-07,PPR_2|PF13041.2|1.8e-13,PPR_2|PF13041.2|2.3e-12,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|0.19,PPR_2|PF13041.2|44,PPR_2|PF13041.2|1.3e+02,PPR|PF01535.16|1.3e+03,PPR|PF01535.16|72,PPR|PF01535.16|1.5,PPR|PF01535.16|2.8e+02,PPR|PF01535.16|0.91,PPR|PF01535.16|2.5e-09,PPR|PF01535.16|0.0039,PPR|PF01535.16|0.5,PPR|PF01535.16|0.00018,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|6.7e-06,PPR|PF01535.16|7.6e+03,PPR|PF01535.16|0.011,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.082,PPR|PF01535.16|0.036,PPR|PF01535.16|1.3e+04,PPR|PF01535.16|3.6,PPR|PF01535.16|1.3e+04,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|2e-05,PPR_1|PF12854.3|7.7,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|0.95,PPR_1|PF12854.3|2.5e-09,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|68,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|0.05,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|2.7e+03,PPR_3|PF13812.2|4.2e+02,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|0.00051,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.35,PPR_3|PF13812.2|0.56,PPR_3|PF13812.2|3.1e+03,PPR_3|PF13812.2|20,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|6.3,PPR_3|PF13812.2|1.6e+04,DYW_deaminase|PF14432.2|1.3e-31 S_Transcript_121305:95-2944(+)
MVIFFHTTVNSSMDKLAAIPSSFNCFNSLLLQNPSTKKLNFSFTCHSLGVVDVPLSVSLSSSLLHLTQISNYFDDPKKITSLSLVKQVHAQMMKLPKGVVSDDHFAENLITSYLNFRDFHSAVMVFFLGFRRNFVLWRSFLEEFKSLGGDPIEILEVFSELHSKGVDFDNRILTVMLKLCAILMDKWLGVEVHACLIKRGFELDVHSKGALMNFYGRCWGIDDAHKMFYEMPEPEVSLWNEAIVAALQNASPMKALQLFQDMQLSFAKPDIFTIAKALQACAKRRALSEGKQIHGYVFRNDMERDLSICNGFISMYSKNSKVELARKVFDTVENPNLSSWNSMISGYASLGYFVEAMELFHEMESHNVKQDTVTWNCLLSSHLQYGLFHEVLSILKNMLVAKVKPNPGSITPAIQAISELNLVKSGKEIHGFVLRHGLEFDEYVQTTLLDMYVKMDQLVKAQAVFNFMKTTNIVAWNSLISGYSSKGIFDASADLINRMEQEGIKPDIVTWNSLLSGYSLNGHVNDALAVMDRMKSSGLTPNVVSWTALISGSSQNGKHKEAFNFFLQMLEEDVKPNSATISSLLQACAGMSWLRKGKEIHCWCIRNGFHEDVLVATSLIQMYIKSGSLTSASDIFDRMKNKTVATWNCMIMGLAVYSQGKEGIVFFHKMCELGLQPDAITFTALLSGCKNSSLLNEGWKYFDSMKADYNIVPRIEHYSCMVDLLGRAGYLDEAWDFMQTMPIKPDASVWGSLLQSCRAHNNLQLGKMAAENLFQLEPNNSANYVVMMNLYSMSHRWDDVVNVREMMSARGVTIQHGWSWIELDRKAHIFSEDDPHPDIGSIYFELYQLVSEMKKVGYIPDTKSVYQDIDESEKEKVLLSHTEKLAITFGLIKMKNSSPIRVIKSTRMCSDCHIAAKYMSLVRNREIILKDGVRFHHFREGRCSCNDCW*

Click here to download the sequence:
Link to NCBI Protein BLAST