Transcript Information: S_Transcript_12245.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value1.7E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2419400576418
Replicate 21.9121084283179
Replicate 30.73770944334402
Condition 2: 8 Hour
Replicate 11.279523419028
Replicate 21.6406022335799
Replicate 31.4210565069988
Condition 3: 24 Hour
Replicate 10.43689766981188
Replicate 20.45327623152695
Replicate 31.0088817762046


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12245.p1 GENE.S_Transcript_12245~~S_Transcript_12245.p1 ORF type:complete len:150 (+),score=39.65,Nefa_Nip30_N|PF10187.5|7.1e-17 S_Transcript_12245:344-793(+)
ATGGCCGAGGATCTTCCTCCTCCCATCAGATTGATGAATTTCGTGTCTCAGGAACAGTTGGATGAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGAAAGATGCTGAGTTCAACGAAAGATTCAAGCATCGACCTCCCAAGGCTTTGGATGAGGATGAGACTGAATTCCTAGAAAAATTGGAGACGTCAAGGAAAGAATATGAACAGCATATTGCAGATGAAGAAACTCAAGAACTAAGGAGATTCCAGGTGACATATTCAATCTCATTTAAGTGGGACCACCTTCAAGATATTGCTCACAGGAACTATTTTAGACTGTTATTGTGTCTTCAACCTAGTCCCCTCATAATCATAACAATGGAAAGTTACATTCCAGAGAGAAAATATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12245.p1 GENE.S_Transcript_12245~~S_Transcript_12245.p1 ORF type:complete len:150 (+),score=39.65,Nefa_Nip30_N|PF10187.5|7.1e-17 S_Transcript_12245:344-793(+)
MAEDLPPPIRLMNFVSQEQLDEAKRTRGERVEDGTAQRDRPLYEILQENKDKKDAEFNERFKHRPPKALDEDETEFLEKLETSRKEYEQHIADEETQELRRFQVTYSISFKWDHLQDIAHRNYFRLLLCLQPSPLIIITMESYIPERKY*

Click here to download the sequence:
Link to NCBI Protein BLAST