Transcript Information: S_Transcript_12246.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value1.1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.3145504323132
Replicate 29.0796864717465
Replicate 37.0933600321541
Condition 2: 8 Hour
Replicate 19.186321982765
Replicate 29.2068761709644
Replicate 39.8380835099914
Condition 3: 24 Hour
Replicate 16.9735589604589
Replicate 29.065524630539
Replicate 37.3725975953416


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12246.p1 GENE.S_Transcript_12246~~S_Transcript_12246.p1 ORF type:5prime_partial len:260 (+),score=20.45 S_Transcript_12246:1-780(+)
AGAATGCATACTAAAAACGCTGAGTCTTCGGCACCAAAAAAAAACGCTCAGTACATCTGCTCGAAGAACACAAAAGCCCCCTCTCTCACCCAAACCCTAGCACCACCTCTCACCGGCACCGCTGTGCCCTCCGGTCTCCCGCCGGACCCTCTTTCCGGTGTACTCCCACAGCACCCTTCCGACACACTCCCTCCAACCCCTCTCTCATCGGTGCAATCTCAATCTCACGCCCAAACCCCAGCACGAAGGTTACTCGCCGCTGCACTCTCCGGTCTCCCTTTGGCACTCTCCCTCCGGCGCAAGAAGGCTGCTCACCGCTGTTCTCTCAGTCTCTCTATGAGGTTTCTGCCTTTTGACATTGGCAGTTGGATGAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGCGAGATGCTGAGTTCAATGAACGATTCAAGCATCATATGTGTCTTTCTCTGCTCACAATTTATTCGCTCCTTTGTGTGCGAAATCAAAATTGACTGCATTCTCATCACTCTATATAGGTCAGGAACTTTGCGAGTGCCAGTTATTGAGGTTCTGTTCAGTGTATATGTACTATTAAGGAGCTATGAGAGCTTGGAAAAATTTAGGGGGAAGGAAGATCAAAATGCTGGTAGCCTGGCCTTAGATGCAATACCTGACTGCACAAGTTACTGTATGAGCTCTTTATGTGGTTATATTTTGTATCTTCTTTCTATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12246.p1 GENE.S_Transcript_12246~~S_Transcript_12246.p1 ORF type:5prime_partial len:260 (+),score=20.45 S_Transcript_12246:1-780(+)
RMHTKNAESSAPKKNAQYICSKNTKAPSLTQTLAPPLTGTAVPSGLPPDPLSGVLPQHPSDTLPPTPLSSVQSQSHAQTPARRLLAAALSGLPLALSLRRKKAAHRCSLSLSMRFLPFDIGSWMKQREPGVKELRTALLREIVLSMRFCRRTRTSEMLSSMNDSSIICVFLCSQFIRSFVCEIKIDCILITLYRSGTLRVPVIEVLFSVYVLLRSYESLEKFRGKEDQNAGSLALDAIPDCTSYCMSSLCGYILYLLSI*

Click here to download the sequence:
Link to NCBI Protein BLAST