Transcript Information: S_Transcript_12248.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value1.5E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.50142703539806
Replicate 30.20957654640455
Condition 2: 8 Hour
Replicate 10.84816893306779
Replicate 20.25422555272417
Replicate 30
Condition 3: 24 Hour
Replicate 10.24823731239312
Replicate 20.90140159678654
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12248.p1 GENE.S_Transcript_12248~~S_Transcript_12248.p1 ORF type:5prime_partial len:176 (+),score=15.49 S_Transcript_12248:1-528(+)
AGAATGCATACTAAAAACGCTGAGTCTTCGGCACCAAAAAAAAACGCTCAGTACATCTGCTCGAAGAACACAAAAGCCCCCTCTCTCACCCAAACCCTAGCACCACCTCTCACCGGCACCGCTGTGCCCTCCGGTCTCCCGCCGGACCCTCTTTCCGGTGTACTCCCACAGCACCCTTCCGACACACTCCCTCCAACCCCTCTCTCATCGGTGCAATCTCAATCTCACGCCCAAACCCCAGCACGAAGGTTACTCGCCGCTGCACTCTCCGGTCTCCCTTTGGCACTCTCCCTCCGGCGCAAGAAGGCTGCTCACCGCTGTTCTCTCAGTCTCTCTATGAGGTTTCTGCCTTTTGACATTGGCAGTTGGATGAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGCGAGATGCTGAGTTCAATGAACGATTCAAGCATTGTCACGAACATTGCGAGTGCCAGTTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12248.p1 GENE.S_Transcript_12248~~S_Transcript_12248.p1 ORF type:5prime_partial len:176 (+),score=15.49 S_Transcript_12248:1-528(+)
RMHTKNAESSAPKKNAQYICSKNTKAPSLTQTLAPPLTGTAVPSGLPPDPLSGVLPQHPSDTLPPTPLSSVQSQSHAQTPARRLLAAALSGLPLALSLRRKKAAHRCSLSLSMRFLPFDIGSWMKQREPGVKELRTALLREIVLSMRFCRRTRTSEMLSSMNDSSIVTNIASASY*

Click here to download the sequence:
Link to NCBI Protein BLAST