Transcript Information: S_Transcript_122487.p1


Annotated TAIR IDAT3G08505.2
Annotated Gene Namezinc finger (CCCH-type/C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2580603-2582043 | Reverse length=323
E-Value1.8E-156
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.495200171153
Replicate 221.453320232722
Replicate 328.581146251105
Condition 2: 8 Hour
Replicate 120.971930809114
Replicate 218.354803994472
Replicate 317.959484860551
Condition 3: 24 Hour
Replicate 131.982840469655
Replicate 222.601204362048
Replicate 323.201493886474


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_122487.p1 GENE.S_Transcript_122487~~S_Transcript_122487.p1 ORF type:complete len:362 (+),score=61.28,zf-CCCH|PF00642.20|0.031,zf-CCCH|PF00642.20|2.8e-06,zf-CCCH|PF00642.20|0.00031,zf-CCCH|PF00642.20|3,Torus|PF16131.1|0.00015,Torus|PF16131.1|0.0023,Torus|PF16131.1|0.0035,Torus|PF16131.1|2.6,zf-CCCH_3|PF15663.1|1.6e-08,zf-CCCH_3|PF15663.1|39,zf-CCCH_3|PF15663.1|2e+02,zf-RING_2|PF13639.2|5e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|7.3e-08,zf-RING_2|PF13639.2|1.1e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|2.9e-07,zf-RING_5|PF14634.2|4.5e+03,zf-RING_5|PF14634.2|1.1e+04,zf-RING_5|PF14634.2|7e-06 S_Transcript_122487:177-1262(+)
ATGTCCAATAGGATTTTGTGCAAGTTCTTTGCTCATGGAGCATGTCTCAAAGGAGAGCATTGTGAATATGCACATGATTGGACTGCCCCTGCAAATAATATTTGCACCTTCTATCAGAGAGGAAACTGCGCTTATGGCAGTAGATGCAGATATGATCATGTCAAAGTTTCTAGGACGCAGTCTTCTGGTTCCTCATCATCAACTGTTTCCGTTGGGCCAAAAGTCTCAGGTTCATCTTCAATTTCGTCTTCTGCAGTAACTATAAGTGGGACGGCTCCAATTGCTAGTGTTAAAGCAGAACTATCTCCTTCAAGCAGACAATTCCTTCCTTCAAGCATAACTACATGGAGTCAACAATCTGGCACTACTGACACTTCAAAAGATGGTTTTGGGGGGGAAACTAGGGTAGATGGACCGGCTGATCAAGTTATTTGTTCATTTGCTGCTGCTGGACACTGCCCTAGGGGGGACAAATGTCCTCACATTCACGGGGACTTGTGTCCAACTTGTGGAAAGCATTGCTTGCATCCCTTTAGGCCCAAAGAACGCGAAGAACATTCCAGAGCTTGTGAGAAAATGCAAAGGCACCTTGAATCACTTAAACGTAGTCAAGAGATAGAATGCAGTGTGTGCTTAGAGCGTGTGCTCTCAAAGCTAAAACCAGGTGAACGGAAGTTTGGGTTGATGTCAGAATGTGATCATCCATTCTGTATTTCTTGCATCAGGGAATGGCGTAGCAGTTCTCCTACTTCTGGGATGGATGTTAATTCCACATTAAGGGCCTGCCCCATATGTCGCAAGCTTTCATATTTTGTGATTCCAAGTGTAATTTGGTATTTCTCAAAAGATGAGAAGGAGGAAATCATTGACAATTACAAGGCCAAACTTAAGTCCATTGATTGCAAGTATTTTGATTTTGGCAATGGTTCATGCCCTTTTGGAACTAGTTGCTTTTACAAGCATGCTTATCGTGATGGCCATCTTGAGGAAGTGGCTTTATGTCATCTTGGGGCTTCTGATGGACAGACTATTATTGTTAAAAATATTAGGCTTTCAGACTTCCTCAACGATGTGCACATAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_122487.p1 GENE.S_Transcript_122487~~S_Transcript_122487.p1 ORF type:complete len:362 (+),score=61.28,zf-CCCH|PF00642.20|0.031,zf-CCCH|PF00642.20|2.8e-06,zf-CCCH|PF00642.20|0.00031,zf-CCCH|PF00642.20|3,Torus|PF16131.1|0.00015,Torus|PF16131.1|0.0023,Torus|PF16131.1|0.0035,Torus|PF16131.1|2.6,zf-CCCH_3|PF15663.1|1.6e-08,zf-CCCH_3|PF15663.1|39,zf-CCCH_3|PF15663.1|2e+02,zf-RING_2|PF13639.2|5e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|7.3e-08,zf-RING_2|PF13639.2|1.1e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|2.9e-07,zf-RING_5|PF14634.2|4.5e+03,zf-RING_5|PF14634.2|1.1e+04,zf-RING_5|PF14634.2|7e-06 S_Transcript_122487:177-1262(+)
MSNRILCKFFAHGACLKGEHCEYAHDWTAPANNICTFYQRGNCAYGSRCRYDHVKVSRTQSSGSSSSTVSVGPKVSGSSSISSSAVTISGTAPIASVKAELSPSSRQFLPSSITTWSQQSGTTDTSKDGFGGETRVDGPADQVICSFAAAGHCPRGDKCPHIHGDLCPTCGKHCLHPFRPKEREEHSRACEKMQRHLESLKRSQEIECSVCLERVLSKLKPGERKFGLMSECDHPFCISCIREWRSSSPTSGMDVNSTLRACPICRKLSYFVIPSVIWYFSKDEKEEIIDNYKAKLKSIDCKYFDFGNGSCPFGTSCFYKHAYRDGHLEEVALCHLGASDGQTIIVKNIRLSDFLNDVHIS*

Click here to download the sequence:
Link to NCBI Protein BLAST