Transcript Information: S_Transcript_122488.p1


Annotated TAIR IDAT3G08505.2
Annotated Gene Namezinc finger (CCCH-type/C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2580603-2582043 | Reverse length=323
E-Value3E-135
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.3074472781925
Replicate 27.384842242744
Replicate 36.9783325721732
Condition 2: 8 Hour
Replicate 17.5370402368246
Replicate 26.5115567766356
Replicate 36.4700909570214
Condition 3: 24 Hour
Replicate 17.130242636223
Replicate 26.3609450370206
Replicate 38.0752491442575


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_122488.p1 GENE.S_Transcript_122488~~S_Transcript_122488.p1 ORF type:complete len:481 (+),score=83.57,Torus|PF16131.1|0.00018,Torus|PF16131.1|0.0033,Torus|PF16131.1|0.0052,Torus|PF16131.1|2.4,zf-CCCH|PF00642.20|0.044,zf-CCCH|PF00642.20|4e-06,zf-CCCH|PF00642.20|0.00043,zf-CCCH|PF00642.20|0.38,zf-CCCH|PF00642.20|7.1e+03,zf-CCCH_3|PF15663.1|2.6e-08,zf-CCCH_3|PF15663.1|60,zf-CCCH_3|PF15663.1|7.6e+02,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.1e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.3e-07,zf-CCCH_2|PF14608.2|0.013,zf-CCCH_2|PF14608.2|3.7,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|1 S_Transcript_122488:168-1610(+)
ATGTCCAATAGGATTTTGTGCAAGTTCTTTGCTCATGGAGCATGTCTCAAAGGAGAGCATTGTGAATATGCACATGATTGGACTGCCCCTGCAAATAATATTTGCACCTTCTATCAGAGAGGAAACTGCGCTTATGGCAGTAGATGCAGATATGATCATGTCAAAGTTTCTAGGACGCAGTCTTCTGGTTCCTCATCATCAACTGTTTCCGTTGGGCCAAAAGTCTCAGGTTCATCTTCAATTTCGTCTTCTGCAGTAACTATAAGTGGGACGGCTCCAATTGCTAGTGTTAAAGCAGAACTATCTCCTTCAAGCAGACAATTCCTTCCTTCAAGCATAACTACATGGAGTCAACAATCTGGCACTACTGACACTTCAAAAGATGGTTTTGGGGGGGAAACTAGGGTAGATGGACCGGCTGATCAAGTTATTTGTTCATTTGCTGCTGCTGGACACTGCCCTAGGGGGGACAAATGTCCTCACATTCACGGGGACTTGTGTCCAACTTGTGGAAAGCATTGCTTGCATCCCTTTAGGCCCAAAGAACGCGAAGAACATTCCAGAGCTTGTGAGAAAATGCAAAGGCACCTTGAATCACTTAAACGTAGTCAAGAGATAGAATGCAGTGTGTGCTTAGAGCGTGTGCTCTCAAAGCTAAAACCAGGTGAACGGAAGTTTGGGTTGATGTCAGAATGTGATCATCCATTCTGTATTTCTTGCATCAGGGAATGGCGTAGCAGTTCTCCTACTTCTGGGATGGATGTTAATTCCACATTAAGGGCCTGCCCCATATGTCGCAAGCTTTCATATTTTGTGATTCCAAGTGTAATTTGGTATTTCTCAAAAGATGAGAAGGAGGAAATCATTGACAATTACAAGGCCAAACTTAAGTCCATTGATTGCAAGTATTTTGATTTTGGCAATGGTTCATGCCCTTTTGGACCTAGTTGCTTTTACAAGCACGCGGTGAAGCCAGGCTTATGTTGGAAAAGGTGTATGAACCCAAAAATGTACAGAAAACCATACATATATCGTCGCCATAAGGGCTTAAGGGAGCAAATGGACGATGTCAATGATGAAGATTTATTATCTGAACATCTTGCAACATGGATGCTTAATGGACTAGAGGAAAACTACGCTAATGCTTATGATGAAGAAGATTTTCTTATTCCCTGGGAGAGTGCTTTCATGTGTTTGCAGCCTCCATATGCTGAGGACGATGATGATGATGTACCCTTCAATGTTGGTCAAATGGACTCTGTACATGTTTTGTTTGATTACTTATACCGACCCTATCAGGGTCTAAAGGAAGAATTGGAGCTAGATAAACTTGAGAAAAAAAAATATTGTGGTGATTATAATGAAGAAGATTTTCTTACACCCTGGCAGAGGTCTTTCATGTGGTCGCAGCTGGGATATGATATGAGTGATGATGACGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_122488.p1 GENE.S_Transcript_122488~~S_Transcript_122488.p1 ORF type:complete len:481 (+),score=83.57,Torus|PF16131.1|0.00018,Torus|PF16131.1|0.0033,Torus|PF16131.1|0.0052,Torus|PF16131.1|2.4,zf-CCCH|PF00642.20|0.044,zf-CCCH|PF00642.20|4e-06,zf-CCCH|PF00642.20|0.00043,zf-CCCH|PF00642.20|0.38,zf-CCCH|PF00642.20|7.1e+03,zf-CCCH_3|PF15663.1|2.6e-08,zf-CCCH_3|PF15663.1|60,zf-CCCH_3|PF15663.1|7.6e+02,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.1e-07,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.3e-07,zf-CCCH_2|PF14608.2|0.013,zf-CCCH_2|PF14608.2|3.7,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|1 S_Transcript_122488:168-1610(+)
MSNRILCKFFAHGACLKGEHCEYAHDWTAPANNICTFYQRGNCAYGSRCRYDHVKVSRTQSSGSSSSTVSVGPKVSGSSSISSSAVTISGTAPIASVKAELSPSSRQFLPSSITTWSQQSGTTDTSKDGFGGETRVDGPADQVICSFAAAGHCPRGDKCPHIHGDLCPTCGKHCLHPFRPKEREEHSRACEKMQRHLESLKRSQEIECSVCLERVLSKLKPGERKFGLMSECDHPFCISCIREWRSSSPTSGMDVNSTLRACPICRKLSYFVIPSVIWYFSKDEKEEIIDNYKAKLKSIDCKYFDFGNGSCPFGPSCFYKHAVKPGLCWKRCMNPKMYRKPYIYRRHKGLREQMDDVNDEDLLSEHLATWMLNGLEENYANAYDEEDFLIPWESAFMCLQPPYAEDDDDDVPFNVGQMDSVHVLFDYLYRPYQGLKEELELDKLEKKKYCGDYNEEDFLTPWQRSFMWSQLGYDMSDDDD*

Click here to download the sequence:
Link to NCBI Protein BLAST